public BuildLibraryDlg(IDocumentUIContainer documentContainer)
{
InitializeComponent();
Icon = Resources.Skyline;
_documentUiContainer = documentContainer;
panelFiles.Visible = false;
textName.Focus();
textPath.Text = Settings.Default.LibraryDirectory;
comboAction.SelectedItem = LibraryBuildAction.Create.GetLocalizedString();
textCutoff.Text = Settings.Default.LibraryResultCutOff.ToString(LocalizationHelper.CurrentCulture);
if (documentContainer.Document.PeptideCount == 0)
{
cbFilter.Hide();
}
else
{
cbFilter.Checked = Settings.Default.LibraryFilterDocumentPeptides;
}
cbKeepRedundant.Checked = Settings.Default.LibraryKeepRedundant;
_helper = new MessageBoxHelper(this);
_driverStandards = new SettingsListComboDriver <IrtStandard>(comboStandards, Settings.Default.IrtStandardList);
_driverStandards.LoadList(IrtStandard.EMPTY.GetKey());
}
private void InitializeMsMsFilterUI()
{
_driverIsolationScheme = new SettingsListComboDriver <IsolationScheme>(comboIsolationScheme,
Settings.Default.IsolationSchemeList);
string sel = (FullScan.IsolationScheme != null ? FullScan.IsolationScheme.Name : null);
_driverIsolationScheme.LoadList(sel);
comboAcquisitionMethod.Items.AddRange(FullScanAcquisitionMethod.ALL.Cast <object>().ToArray());
comboProductAnalyzerType.Items.AddRange(TransitionFullScan.MASS_ANALYZERS.Cast <object>().ToArray());
comboAcquisitionMethod.SelectedItem = FullScan.AcquisitionMethod;
// Update the product analyzer type in case the SelectedIndex is still -1
UpdateProductAnalyzerType();
}
public EditRTDlg(IEnumerable <RetentionTimeRegression> existing)
{
_existing = existing;
InitializeComponent();
Icon = Resources.Skyline;
_gridViewDriver = new RetentionTimeGridViewDriver(gridPeptides, bindingPeptides,
new SortableBindingList <MeasuredPeptide>());
_driverCalculators = new SettingsListComboDriver <RetentionScoreCalculatorSpec>(
comboCalculator, Settings.Default.RTScoreCalculatorList);
_driverCalculators.LoadList(null);
ShowPeptides(Settings.Default.EditRTVisible);
}
public BuildLibraryDlg(SkylineWindow skylineWindow)
{
InitializeComponent();
Icon = Resources.Skyline;
_skylineWindow = skylineWindow;
_documentUiContainer = skylineWindow;
// Store locations of those controls since we move the irt label/combo around
_actionLabelPos = actionLabel.Location;
_actionComboPos = comboAction.Location;
_iRTLabelPos = iRTPeptidesLabel.Location;
_iRTComboPos = comboStandards.Location;
panelFiles.Visible = false;
textName.Focus();
textPath.Text = Settings.Default.LibraryDirectory;
comboAction.SelectedItem = LibraryBuildAction.Create.GetLocalizedString();
textCutoff.Text = Settings.Default.LibraryResultCutOff.ToString(LocalizationHelper.CurrentCulture);
if (_documentUiContainer.Document.PeptideCount == 0)
{
cbFilter.Hide();
}
else
{
cbFilter.Checked = Settings.Default.LibraryFilterDocumentPeptides;
}
cbKeepRedundant.Checked = Settings.Default.LibraryKeepRedundant;
ceCombo.Items.AddRange(
Enumerable.Range(PrositConstants.MIN_NCE, PrositConstants.MAX_NCE - PrositConstants.MIN_NCE + 1).Select(c => (object)c)
.ToArray());
ceCombo.SelectedItem = Settings.Default.PrositNCE;
_helper = new MessageBoxHelper(this);
_driverStandards = new SettingsListComboDriver <IrtStandard>(comboStandards, Settings.Default.IrtStandardList);
_driverStandards.LoadList(IrtStandard.EMPTY.GetKey());
}
private void InitializeMs1FilterUI()
{
_driverEnrichments = new SettingsListComboDriver <IsotopeEnrichments>(comboEnrichments,
Settings.Default.IsotopeEnrichmentsList);
var sel = (FullScan.IsotopeEnrichments != null ? FullScan.IsotopeEnrichments.Name : null);
_driverEnrichments.LoadList(sel);
comboPrecursorIsotopes.Items.AddRange(
new object[]
{
FullScanPrecursorIsotopes.None.GetLocalizedString(),
FullScanPrecursorIsotopes.Count.GetLocalizedString(),
FullScanPrecursorIsotopes.Percent.GetLocalizedString()
});
comboPrecursorAnalyzerType.Items.AddRange(TransitionFullScan.MASS_ANALYZERS.Cast <object>().ToArray());
comboPrecursorIsotopes.SelectedItem = FullScan.PrecursorIsotopes.GetLocalizedString();
// Update the precursor analyzer type in case the SelectedIndex is still -1
UpdatePrecursorAnalyzerType();
}
public TransitionSettingsUI(SkylineWindow parent)
{
InitializeComponent();
// Populate the fragment finder combo boxes
foreach (string item in TransitionFilter.GetStartFragmentFinderLabels())
{
comboRangeFrom.Items.Add(item);
}
foreach (string item in TransitionFilter.GetEndFragmentFinderLabels())
{
comboRangeTo.Items.Add(item);
}
_parent = parent;
_transitionSettings = _parent.DocumentUI.Settings.TransitionSettings;
// Initialize prediction settings
comboPrecursorMass.SelectedItem = Prediction.PrecursorMassType.GetLocalizedString();
comboIonMass.SelectedItem = Prediction.FragmentMassType.GetLocalizedString();
_driverCE = new SettingsListComboDriver <CollisionEnergyRegression>(comboCollisionEnergy,
Settings.Default.CollisionEnergyList);
string sel = (Prediction.CollisionEnergy == null ? null : Prediction.CollisionEnergy.Name);
_driverCE.LoadList(sel);
_driverDP = new SettingsListComboDriver <DeclusteringPotentialRegression>(comboDeclusterPotential,
Settings.Default.DeclusterPotentialList);
sel = (Prediction.DeclusteringPotential == null ? null : Prediction.DeclusteringPotential.Name);
_driverDP.LoadList(sel);
_driverCoV = new SettingsListComboDriver <CompensationVoltageParameters>(comboCompensationVoltage,
Settings.Default.CompensationVoltageList);
_driverCoV.LoadList(Prediction.CompensationVoltage == null ? null : Prediction.CompensationVoltage.Name);
_driverOptimizationLibrary = new SettingsListComboDriver <OptimizationLibrary>(comboOptimizationLibrary,
Settings.Default.OptimizationLibraryList);
_driverOptimizationLibrary.LoadList(Prediction.OptimizedLibrary == null ? null : Prediction.OptimizedLibrary.Name);
if (Prediction.OptimizedMethodType == OptimizedMethodType.None)
{
comboOptimizeType.SelectedIndex = 0;
}
else
{
cbUseOptimized.Checked = true;
comboOptimizeType.SelectedItem = Prediction.OptimizedMethodType.GetLocalizedString();
}
// Initialize filter settings
textPrecursorCharges.Text = Filter.PrecursorCharges.ToArray().ToString(", "); // Not L10N? Internationalization of comma?
textIonCharges.Text = Filter.ProductCharges.ToArray().ToString(", "); // Not L10N? Internationalization of comma?
textIonTypes.Text = TransitionFilter.ToStringIonTypes(Filter.IonTypes, true);
comboRangeFrom.SelectedItem = Filter.FragmentRangeFirst.Label;
comboRangeTo.SelectedItem = Filter.FragmentRangeLast.Label;
textExclusionWindow.Text = Filter.PrecursorMzWindow != 0
? Filter.PrecursorMzWindow.ToString(LocalizationHelper.CurrentCulture)
: string.Empty;
cbExclusionUseDIAWindow.Checked = Filter.ExclusionUseDIAWindow;
cbAutoSelect.Checked = Filter.AutoSelect;
_driverIons = new MeasuredIonListBoxDriver(listAlwaysAdd, Settings.Default.MeasuredIonList);
_driverIons.LoadList(Filter.MeasuredIons);
// Initialize library settings
cbLibraryPick.Checked = (Libraries.Pick != TransitionLibraryPick.none);
panelPick.Visible = cbLibraryPick.Checked;
textTolerance.Text = Libraries.IonMatchTolerance.ToString(LocalizationHelper.CurrentCulture);
textIonCount.Text = Libraries.IonCount.ToString(LocalizationHelper.CurrentCulture);
if (Libraries.Pick == TransitionLibraryPick.filter)
{
radioFiltered.Checked = true;
}
else if (Libraries.Pick == TransitionLibraryPick.all_plus)
{
radioAllAndFiltered.Checked = true;
}
// Initialize instrument settings
textMinMz.Text = Instrument.MinMz.ToString(LocalizationHelper.CurrentCulture);
textMaxMz.Text = Instrument.MaxMz.ToString(LocalizationHelper.CurrentCulture);
cbDynamicMinimum.Checked = Instrument.IsDynamicMin;
textMzMatchTolerance.Text = Instrument.MzMatchTolerance.ToString(LocalizationHelper.CurrentCulture);
if (Instrument.MaxTransitions.HasValue)
{
textMaxTrans.Text = Instrument.MaxTransitions.Value.ToString(LocalizationHelper.CurrentCulture);
}
if (Instrument.MaxInclusions.HasValue)
{
textMaxInclusions.Text = Instrument.MaxInclusions.Value.ToString(LocalizationHelper.CurrentCulture);
}
if (Instrument.MinTime.HasValue)
{
textMinTime.Text = Instrument.MinTime.Value.ToString(LocalizationHelper.CurrentCulture);
}
if (Instrument.MaxTime.HasValue)
{
textMaxTime.Text = Instrument.MaxTime.Value.ToString(LocalizationHelper.CurrentCulture);
}
// Initialize full-scan settings
FullScanSettingsControl = new FullScanSettingsControl(_parent)
{
Anchor = (AnchorStyles.Top | AnchorStyles.Left),
Location = new Point(0, 0),
Size = new Size(363, 491)
};
FullScanSettingsControl.IsolationSchemeChangedEvent += IsolationSchemeChanged;
tabFullScan.Controls.Add(FullScanSettingsControl);
// VISUAL:
// - Store the distance between the cbExclusionDIAWindow and the lower end of the box (to use as margin later)
// - Shift the cbExclusionDIAWindow down (it is only higher in the designer for better manipulation)
_lower_margin = groupBox1.Height - textExclusionWindow.Location.Y - textExclusionWindow.Height;
int pixelShift = cbExclusionUseDIAWindow.Location.Y - lbPrecursorMzWindow.Location.Y;
cbExclusionUseDIAWindow.Location = new Point(cbExclusionUseDIAWindow.Location.X, cbExclusionUseDIAWindow.Location.Y - pixelShift);
DoIsolationSchemeChanged();
}
