private Annotations GetResultAnnotations(SrmDocument document, ResultRef resultRef)
{
var measuredResults = document.MeasuredResults;
if (measuredResults == null)
{
throw ElementNotFoundException(resultRef);
}
var nodeRef = (NodeRef)resultRef.Parent;
var identityPath = ToIdentityPath(nodeRef);
var docNode = document.FindNode(identityPath);
for (int replicateIndex = 0; replicateIndex < measuredResults.Chromatograms.Count; replicateIndex++)
{
var chromSet = measuredResults.Chromatograms[replicateIndex];
if (resultRef.Matches(chromSet))
{
var transitionGroup = docNode as TransitionGroupDocNode;
if (transitionGroup != null)
{
if (transitionGroup.Results == null || transitionGroup.Results.Count <= replicateIndex)
{
throw ElementNotFoundException(resultRef);
}
int i = IndexOfChromInfo(chromSet, (PrecursorResultRef)resultRef,
transitionGroup.Results[replicateIndex]);
if (i < 0)
{
throw ElementNotFoundException(resultRef);
}
return(transitionGroup.Results[replicateIndex][i].Annotations);
}
else
{
var transition = docNode as TransitionDocNode;
if (transition != null)
{
if (transition.Results == null || transition.Results.Count <= replicateIndex)
{
throw ElementNotFoundException(resultRef);
}
int i = IndexOfChromInfo(chromSet, (TransitionResultRef)resultRef,
transition.Results[replicateIndex]);
if (i < 0)
{
throw ElementNotFoundException(resultRef);
}
return(transition.Results[replicateIndex][i].Annotations);
}
else
{
throw AnnotationsNotSupported(resultRef);
}
}
}
}
throw ElementNotFoundException(resultRef);
}
public SrmDocument SetResultAnnotations(SrmDocument document, ResultRef resultRef, Annotations annotations)
{
var measuredResults = document.MeasuredResults;
if (measuredResults == null)
{
throw ElementNotFoundException(resultRef);
}
var nodeRef = (NodeRef)resultRef.Parent;
var identityPath = ToIdentityPath(nodeRef);
var docNode = document.FindNode(identityPath);
for (int replicateIndex = 0; replicateIndex < measuredResults.Chromatograms.Count; replicateIndex++)
{
var chromSet = measuredResults.Chromatograms[replicateIndex];
if (resultRef.Matches(chromSet))
{
var transitionGroup = docNode as TransitionGroupDocNode;
if (transitionGroup != null)
{
var results = transitionGroup.Results.ToArray();
results[replicateIndex] = SetChromInfoAnnotations(chromSet, (PrecursorResultRef)resultRef,
results[replicateIndex], annotations);
docNode = ((TransitionGroupDocNode)docNode).ChangeResults(
new Results <TransitionGroupChromInfo>(results));
}
else
{
var transition = docNode as TransitionDocNode;
if (transition != null)
{
var results = transition.Results.ToArray();
results[replicateIndex] = SetChromInfoAnnotations(chromSet, (TransitionResultRef)resultRef,
results[replicateIndex], annotations);
docNode = ((TransitionDocNode)docNode).ChangeResults(
new Results <TransitionChromInfo>(results));
}
else
{
throw AnnotationsNotSupported(resultRef);
}
}
return((SrmDocument)document.ReplaceChild(identityPath.Parent, docNode));
}
}
throw ElementNotFoundException(resultRef);
}
