/// <summary>
/// Modifies a document in response to the user clicking on a peak in the GraphChromatogram.
/// </summary>
private static SrmDocument PickPeak(SrmDocument document, PickedPeakEventArgs e)
{
document = document.ChangePeak(e.GroupPath, e.NameSet, e.FilePath, e.TransitionId, e.RetentionTime.MeasuredTime, UserSet.TRUE);
var activeTransitionGroup = (TransitionGroupDocNode) document.FindNode(e.GroupPath);
if (activeTransitionGroup.RelativeRT != RelativeRT.Matching)
{
return document;
}
var activeChromInfo = FindChromInfo(document, activeTransitionGroup, e.NameSet, e.FilePath);
var peptide = (PeptideDocNode) document.FindNode(e.GroupPath.Parent);
// See if there are any other transition groups that should have their peak bounds set to the same value
foreach (var transitionGroup in peptide.TransitionGroups)
{
if (transitionGroup.RelativeRT != RelativeRT.Matching)
{
continue;
}
var groupPath = new IdentityPath(e.GroupPath.Parent, transitionGroup.TransitionGroup);
if (Equals(groupPath, e.GroupPath))
{
continue;
}
var chromInfo = FindChromInfo(document, transitionGroup, e.NameSet, e.FilePath);
if (null == chromInfo)
{
continue;
}
document = document.ChangePeak(groupPath, e.NameSet, e.FilePath, null,
activeChromInfo.StartRetentionTime, activeChromInfo.EndRetentionTime, UserSet.TRUE, activeChromInfo.Identified, true);
}
return document;
}
private void graphChromatogram_PickedPeak(object sender, PickedPeakEventArgs e)
{
var graphChrom = sender as GraphChromatogram;
if (graphChrom != null)
graphChrom.LockZoom();
try
{
ModifyDocument(string.Format(Resources.SkylineWindow_graphChromatogram_PickedPeak_Pick_peak__0_F01_, e.RetentionTime),
doc => PickPeak(doc, e));
}
finally
{
if (graphChrom != null)
graphChrom.UnlockZoom();
}
}
/// <summary>
/// Indicates a peak has been picked at a specified retention time
/// for a specific replicate of a specific <see cref="TransitionGroupDocNode"/>.
/// </summary>
/// <param name="nodeGroup">The transition group for which the peak was picked</param>
/// <param name="nodeTran">The transition no which the time was chosen</param>
/// <param name="peakTime">The retention time at which the peak was picked</param>
public void FirePickedPeak(TransitionGroupDocNode nodeGroup, TransitionDocNode nodeTran, ScaledRetentionTime peakTime)
{
if (PickedPeak != null)
{
var filePath = FilePath;
if (filePath == null)
return;
int iGroup = _nodeGroups.IndexOfReference(nodeGroup);
var e = new PickedPeakEventArgs(_groupPaths[iGroup],
nodeTran != null ? nodeTran.Id : null,
_nameChromatogramSet,
filePath,
peakTime);
PickedPeak(this, e);
}
}
