/// <summary>
/// Returns the ReplicateGroupOp based on the current value of Settings.Default.GroupByReplicateAnnotation,
/// and the specified AggregateOp. Note that if the ReplicateGroupOp is not grouping on an annotation,
/// the AggregateOp will be override with the value MEAN.
/// </summary>
public static ReplicateGroupOp FromCurrentSettings(SrmDocument document, GraphValues.AggregateOp aggregateOp)
{
ReplicateValue replicateValue = null;
string annotationName = Settings.Default.GroupByReplicateAnnotation;
if (null != annotationName)
{
replicateValue = ReplicateValue.GetGroupableReplicateValues(document)
.FirstOrDefault(value => value.ToPersistedString() == annotationName);
}
if (null == replicateValue)
{
aggregateOp = GraphValues.AggregateOp.MEAN;
}
return(new ReplicateGroupOp(replicateValue, aggregateOp));
}
private void UpdateAxes(bool resetAxes, GraphValues.AggregateOp aggregateOp, AreaNormalizeToData normalizeData,
AreaNormalizeToView areaView, IsotopeLabelType standardType)
{
if (resetAxes)
{
XAxis.Scale.MaxAuto = XAxis.Scale.MinAuto = true;
YAxis.Scale.MaxAuto = true;
}
if (BarSettings.Type == BarType.PercentStack)
{
YAxis.Scale.Max = 100;
YAxis.Scale.MaxAuto = false;
YAxis.Title.Text = aggregateOp.AnnotateTitle(Resources.AreaReplicateGraphPane_UpdateGraph_Peak_Area_Percentage);
YAxis.Type = AxisType.Linear;
YAxis.Scale.MinAuto = false;
FixedYMin = YAxis.Scale.Min = 0;
}
else
{
if (normalizeData == AreaNormalizeToData.optimization)
{
// If currently log scale or normalized to max, reset the y-axis max
if (YAxis.Type == AxisType.Log || YAxis.Scale.Max == 1)
{
YAxis.Scale.MaxAuto = true;
}
YAxis.Title.Text = aggregateOp.AnnotateTitle(Resources.AreaReplicateGraphPane_UpdateGraph_Percent_of_Regression_Peak_Area);
YAxis.Type = AxisType.Linear;
YAxis.Scale.MinAuto = false;
FixedYMin = YAxis.Scale.Min = 0;
}
else if (areaView == AreaNormalizeToView.area_maximum_view)
{
YAxis.Scale.Max = 1;
if (IsDotProductVisible)
{
// Make YAxis Scale Max a little higher to accommodate for the dot products
YAxis.Scale.Max = 1.1;
}
YAxis.Scale.MaxAuto = false;
YAxis.Title.Text = aggregateOp.AnnotateTitle(Resources.AreaReplicateGraphPane_UpdateGraph_Peak_Area_Normalized);
YAxis.Type = AxisType.Linear;
YAxis.Scale.MinAuto = false;
FixedYMin = YAxis.Scale.Min = 0;
}
else if (Settings.Default.AreaLogScale)
{
// If currently not log scale, reset the y-axis max
if (YAxis.Type != AxisType.Log)
{
YAxis.Scale.MaxAuto = true;
}
if (Settings.Default.PeakAreaMaxArea != 0)
{
YAxis.Scale.MaxAuto = false;
YAxis.Scale.Max = Settings.Default.PeakAreaMaxArea;
}
YAxis.Type = AxisType.Log;
YAxis.Title.Text = GraphValues.AnnotateLogAxisTitle(aggregateOp.AnnotateTitle(
Resources.AreaReplicateGraphPane_UpdateGraph_Peak_Area));
YAxis.Scale.MinAuto = false;
FixedYMin = YAxis.Scale.Min = 1;
}
else
{
// If currently log scale, reset the y-axis max
if (YAxis.Type == AxisType.Log)
{
YAxis.Scale.MaxAuto = true;
}
if (Settings.Default.PeakAreaMaxArea != 0)
{
YAxis.Scale.MaxAuto = false;
YAxis.Scale.Max = Settings.Default.PeakAreaMaxArea;
}
else if (!YAxis.Scale.MaxAuto)
{
YAxis.Scale.MaxAuto = true;
}
string yTitle = Resources.AreaReplicateGraphPane_UpdateGraph_Peak_Area;
switch (areaView)
{
case AreaNormalizeToView.area_ratio_view:
yTitle = string.Format(Resources.AreaReplicateGraphPane_UpdateGraph_Peak_Area_Ratio_To__0_,
standardType.Title);
break;
case AreaNormalizeToView.area_global_standard_view:
yTitle = Resources.AreaReplicateGraphPane_UpdateGraph_Peak_Area_Ratio_To_Global_Standards;
break;
}
YAxis.Title.Text = aggregateOp.AnnotateTitle(yTitle);
YAxis.Type = AxisType.Linear;
YAxis.Scale.MinAuto = false;
FixedYMin = YAxis.Scale.Min = 0;
}
// Handle a switch from percent stack
if (!YAxis.Scale.MaxAuto && YAxis.Scale.Max == 100)
{
YAxis.Scale.MaxAuto = true;
}
}
Legend.IsVisible = Settings.Default.ShowPeakAreaLegend;
AxisChange();
// Reformat Y-Axis for labels and whiskers
var maxY = GraphHelper.GetMaxY(CurveList, this);
if (IsDotProductVisible)
{
var extraSpace = _lableHeight * (maxY / (Chart.Rect.Height - _lableHeight * 2)) * 2;
maxY += extraSpace;
}
GraphHelper.ReformatYAxis(this, maxY > 0 ? maxY : 0.1); // Avoid same min and max, since it blanks the entire graph pane
}
private ReplicateGroupOp(ReplicateValue groupByValue, GraphValues.AggregateOp aggregateOp)
{
GroupByValue = groupByValue;
AggregateOp = aggregateOp;
}