public Chromatogram(Chromatogram metaChromatogram, pwiz.CLI.msdata.Chromatogram chromatogram)
{
source = metaChromatogram.source;
this.chromatogramList = metaChromatogram.chromatogramList;
this.index = index;
Tag = metaChromatogram.Tag;
AnnotationSettings = metaChromatogram.AnnotationSettings;
//element = chromatogram;
id = Element.id;
}
public void updateRow(ChromatogramDataSet.ChromatogramTableRow row, Chromatogram chromatogram)
{
chromatogramList[chromatogram.Index] = chromatogram;
pwiz.CLI.msdata.Chromatogram c = chromatogram.Element;
DataProcessing dp = chromatogram.DataProcessing;
if (dp == null)
{
dp = c.dataProcessing;
}
row.Type = c.cvParamChild(CVID.MS_chromatogram_type).name;
row.DataPoints = c.defaultArrayLength;
row.DpId = (dp == null || dp.id.Length == 0 ? "unknown" : dp.id);
}
private void listView_ItemSelectionChanged(object sender, ListViewItemSelectionChangedEventArgs e)
{
if (listView.SelectedItems.Count > 1)
{
List <string> dataSourceList = new List <string>();
foreach (ListViewItem item in listView.SelectedItems)
{
if (item.SubItems[1].Text != "File Folder")
{
dataSourceList.Add(String.Format("\"{0}\"", item.SubItems[0].Text));
}
}
sourcePathTextBox.Text = String.Join(" ", dataSourceList.ToArray());
ticGraphControl.GraphPane.GraphObjList.Clear();
ticGraphControl.GraphPane.CurveList.Clear();
ticGraphControl.Visible = false;
}
else if (listView.SelectedItems.Count > 0)
{
sourcePathTextBox.Text = listView.SelectedItems[0].SubItems[0].Text;
ticGraphControl.GraphPane.GraphObjList.Clear();
ticGraphControl.GraphPane.CurveList.Clear();
string sourcePath = Path.Combine(CurrentDirectory, sourcePathTextBox.Text);
string sourceType = getSourceType(sourcePath);
if (!String.IsNullOrEmpty(sourceType) &&
sourceType != "File Folder")
{
using (MSDataFile msData = new MSDataFile(sourcePath))
using (ChromatogramList cl = msData.run.chromatogramList)
{
if (cl != null && !cl.empty() && cl.find("TIC") != cl.size())
{
ticGraphControl.Visible = true;
pwiz.CLI.msdata.Chromatogram tic = cl.chromatogram(cl.find("TIC"), true);
Map <double, double> sortedFullPointList = new Map <double, double>();
IList <double> timeList = tic.binaryDataArrays[0].data;
IList <double> intensityList = tic.binaryDataArrays[1].data;
int arrayLength = timeList.Count;
for (int i = 0; i < arrayLength; ++i)
{
sortedFullPointList[timeList[i]] = intensityList[i];
}
ZedGraph.PointPairList points = new ZedGraph.PointPairList(
new List <double>(sortedFullPointList.Keys).ToArray(),
new List <double>(sortedFullPointList.Values).ToArray());
ZedGraph.LineItem item = ticGraphControl.GraphPane.AddCurve("TIC", points, Color.Black, ZedGraph.SymbolType.None);
item.Line.IsAntiAlias = true;
ticGraphControl.AxisChange();
ticGraphControl.Refresh();
}
else
{
ticGraphControl.Visible = false;
}
}
}
else
{
ticGraphControl.Visible = false;
}
}
else
{
sourcePathTextBox.Text = "";
}
}
private void listView_ItemSelectionChanged(object sender, ListViewItemSelectionChangedEventArgs e)
{
string sourcePath = null;
string sourceType = null;
int runIndex = 0;
if (listView.SelectedItems.Count > 0)
{
List <string> dataSourceList = new List <string>();
foreach (ListViewItem item in listView.SelectedItems)
{
var sourceInfo = item.Tag as SourceInfo;
if (sourceInfo != null)
{
dataSourceList.Add(sourceInfo.path.ToString());
sourcePath = sourceInfo.path.Filepath;
sourceType = sourceInfo.type;
runIndex = sourceInfo.path.RunIndex;
}
else
{
dataSourceList.Add(item.SubItems[0].Text);
sourcePath = Path.Combine(CurrentDirectory, sourcePathTextBox.Text);
sourceType = getSourceType(sourcePath);
}
}
sourcePathTextBox.Text = $"\"{String.Join("\" \"", dataSourceList.ToArray())}\"";
}
ticGraphControl.GraphPane.GraphObjList.Clear();
ticGraphControl.GraphPane.CurveList.Clear();
if (listView.SelectedItems.Count != 1)
{
ticGraphControl.Visible = false;
return;
}
if (!String.IsNullOrEmpty(sourceType) &&
sourceType != "File Folder")
{
using (MSData msd = new MSData())
{
ReaderList.FullReaderList.read(sourcePath, msd, runIndex, SpectrumSource.GetReaderConfig());
using (ChromatogramList cl = msd.run.chromatogramList)
{
if (cl != null && !cl.empty() && cl.find("TIC") != cl.size())
{
ticGraphControl.Visible = true;
pwiz.CLI.msdata.Chromatogram tic = cl.chromatogram(cl.find("TIC"), true);
Map <double, double> sortedFullPointList = new Map <double, double>();
IList <double> timeList = tic.binaryDataArrays[0].data;
IList <double> intensityList = tic.binaryDataArrays[1].data;
int arrayLength = timeList.Count;
for (int i = 0; i < arrayLength; ++i)
{
sortedFullPointList[timeList[i]] = intensityList[i];
}
ZedGraph.PointPairList points = new ZedGraph.PointPairList(
new List <double>(sortedFullPointList.Keys).ToArray(),
new List <double>(sortedFullPointList.Values).ToArray());
ZedGraph.LineItem item = ticGraphControl.GraphPane.AddCurve("TIC", points, Color.Black, ZedGraph.SymbolType.None);
item.Line.IsAntiAlias = true;
ticGraphControl.AxisChange();
ticGraphControl.Refresh();
}
else
{
ticGraphControl.Visible = false;
}
}
}
}
else
{
ticGraphControl.Visible = false;
}
}