public void addToShadowTable(SqlConnection conn, MangoIndex index, int id, int storage_id)
{
lock (_sync_object)
{
if (shadow_datatable == null)
{
_createDataTables();
}
if (shadow_datatable.Rows.Count >= 10000)
{
_flushShadowTable(conn);
}
DataRow shadow_row = shadow_datatable.NewRow();
shadow_row["id"] = id;
shadow_row["storage_id"] = storage_id;
shadow_row["gross"] = index.gross;
shadow_row["cmf"] = index.cmf;
shadow_row["xyz"] = index.xyz;
shadow_row["mass"] = index.mass;
int fragments_count = 0;
for (int i = 0; i < index.hash.elements.Count; i++)
{
fragments_count += index.hash.elements[i].count;
}
shadow_row["fragments"] = fragments_count;
string[] counted = index.counted_elements_str.Split(',');
for (int i = 0; i < MangoIndex.COUNTED_ELEMENTS_COUNT; i++)
{
shadow_row[BingoCore.mangoGetCountedElementName(i)] = Convert.ToInt32(counted[i + 1]);
}
shadow_datatable.Rows.Add(shadow_row);
foreach (MoleculeHashElement elem in index.hash.elements)
{
DataRow comp_row = components_datatable.NewRow();
comp_row["id"] = id;
comp_row["hash"] = elem.hash;
comp_row["count"] = elem.count;
components_datatable.Rows.Add(comp_row);
}
}
}
public void addToShadowTable (SqlConnection conn, MangoIndex index, int id, int storage_id)
{
lock (_sync_object)
{
if (shadow_datatable == null)
_createDataTables();
if (shadow_datatable.Rows.Count >= 10000)
_flushShadowTable(conn);
DataRow shadow_row = shadow_datatable.NewRow();
shadow_row["id"] = id;
shadow_row["storage_id"] = storage_id;
shadow_row["gross"] = index.gross;
shadow_row["cmf"] = index.cmf;
shadow_row["xyz"] = index.xyz;
shadow_row["mass"] = index.mass;
int fragments_count = 0;
for (int i = 0; i < index.hash.elements.Count; i++)
fragments_count += index.hash.elements[i].count;
shadow_row["fragments"] = fragments_count;
string[] counted = index.counted_elements_str.Split(',');
for (int i = 0; i < MangoIndex.COUNTED_ELEMENTS_COUNT; i++)
shadow_row[BingoCore.mangoGetCountedElementName(i)] = Convert.ToInt32(counted[i + 1]);
shadow_datatable.Rows.Add(shadow_row);
foreach (MoleculeHashElement elem in index.hash.elements)
{
DataRow comp_row = components_datatable.NewRow();
comp_row["id"] = id;
comp_row["hash"] = elem.hash;
comp_row["count"] = elem.count;
components_datatable.Rows.Add(comp_row);
}
}
}
private static bool _AddMoleculeToIndex (SqlConnection conn, BingoIndexData bingo_data)
{
MangoIndexData data = (MangoIndexData)bingo_data;
MangoIndex index = new MangoIndex();
int id;
if (!index.readPrepared(out id))
{
string message =
String.Format("Molecule with ID={0} wasn't added to the index: {1}",
id, BingoCore.lib.bingoGetWarning());
SqlContext.Pipe.Send(message);
BingoLog.logMessage(message);
return false;
}
// 4 bytes for Id, 2 bytes for similarity fingerprints bits counts
byte[] new_data = new byte[index.cmf.Length + 4 + 2];
index.cmf.CopyTo(new_data, 6);
MemoryStream stream = new MemoryStream(new_data, 0, 6, true);
BinaryWriter writer = new BinaryWriter(stream);
writer.Write(id);
writer.Write((short)index.sim_fp_bits_count);
int storage_id = data.storage.add(new_data, conn);
data.fingerprints.addFingerprint(conn, index.fingerprint, storage_id);
data.addToShadowTable(conn, index, id, storage_id);
return true;
}
