public string getDatabaseWord()
{
if (this.databaseIndex > 0)
{
return((string)LongTextAligner.access_300(this.this_1.this_0).get(this.getDatabaseIndex()));
}
return(null);
}
public virtual int[] align(List words, Range range)
{
if (range.upperEndpoint() - range.lowerEndpoint() < this.tupleSize || words.size() < this.tupleSize)
{
return(LongTextAligner.alignTextSimple(this.refWords.subList(range.lowerEndpoint(), range.upperEndpoint()), words, range.lowerEndpoint()));
}
int[] array = new int[words.size()];
Arrays.fill(array, -1);
int i = 0;
Iterator iterator = new LongTextAligner.Alignment(this, this.getTuples(words), range).getIndices().iterator();
while (iterator.hasNext())
{
LongTextAligner_Alignment_Node longTextAligner_Alignment_Node = (LongTextAligner_Alignment_Node)iterator.next();
for (i = Math.max(i, longTextAligner_Alignment_Node.getQueryIndex()); i < longTextAligner_Alignment_Node.getQueryIndex() + this.tupleSize; i++)
{
array[i] = longTextAligner_Alignment_Node.getDatabaseIndex() + i - longTextAligner_Alignment_Node.getQueryIndex();
}
}
return(array);
}
internal LongTextAligner_Alignment_1(LongTextAligner.Alignment alignment, LongTextAligner longTextAligner, Map map)
{
this_1 = alignment;
this.val_this_0 = longTextAligner;
this.val_cost = map;
}
public Alignment(LongTextAligner longTextAligner, List list, Range range)
{
this_0 = longTextAligner;
this.query = list;
this.indices = new ArrayList();
TreeSet treeSet = new TreeSet();
for (int i = 0; i < list.size(); i++)
{
if (LongTextAligner.access_400(longTextAligner).containsKey(list.get(i)))
{
this.indices.add(Integer.valueOf(i));
Iterator iterator = ((ArrayList)LongTextAligner.access_400(longTextAligner).get(list.get(i))).iterator();
while (iterator.hasNext())
{
Integer integer = (Integer)iterator.next();
if (range.contains(integer.intValue()))
{
treeSet.add(integer);
}
}
}
}
this.shifts = new ArrayList(treeSet);
HashMap hashMap = new HashMap();
PriorityQueue priorityQueue = new PriorityQueue(1, new LongTextAligner_Alignment_1(this, longTextAligner, hashMap));
HashSet hashSet = new HashSet();
HashMap hashMap2 = new HashMap();
LongTextAligner_Alignment_Node longTextAligner_Alignment_Node = new LongTextAligner_Alignment_Node(this, 0, 0, null);
hashMap.put(longTextAligner_Alignment_Node, Integer.valueOf(0));
priorityQueue.add(longTextAligner_Alignment_Node);
while (!priorityQueue.isEmpty())
{
LongTextAligner_Alignment_Node longTextAligner_Alignment_Node2 = (LongTextAligner_Alignment_Node)priorityQueue.poll();
if (!hashSet.contains(longTextAligner_Alignment_Node2))
{
if (longTextAligner_Alignment_Node2.isTarget())
{
ArrayList arrayList = new ArrayList();
while (hashMap2.containsKey(longTextAligner_Alignment_Node2))
{
if (!longTextAligner_Alignment_Node2.isBoundary() && longTextAligner_Alignment_Node2.hasMatch())
{
arrayList.add(longTextAligner_Alignment_Node2);
}
longTextAligner_Alignment_Node2 = (LongTextAligner_Alignment_Node)hashMap2.get(longTextAligner_Alignment_Node2);
}
this.alignment = new ArrayList(arrayList);
Collections.reverse(this.alignment);
return;
}
hashSet.add(longTextAligner_Alignment_Node2);
Iterator iterator2 = longTextAligner_Alignment_Node2.adjacent().iterator();
while (iterator2.hasNext())
{
LongTextAligner_Alignment_Node longTextAligner_Alignment_Node3 = (LongTextAligner_Alignment_Node)iterator2.next();
if (!hashSet.contains(longTextAligner_Alignment_Node3))
{
int num = Math.abs(this.indices.size() - this.shifts.size() - LongTextAligner_Alignment_Node.access_600(longTextAligner_Alignment_Node2) + LongTextAligner_Alignment_Node.access_700(longTextAligner_Alignment_Node2)) - Math.abs(this.indices.size() - this.shifts.size() - LongTextAligner_Alignment_Node.access_600(longTextAligner_Alignment_Node3) + LongTextAligner_Alignment_Node.access_700(longTextAligner_Alignment_Node3));
Integer integer2 = (Integer)hashMap.get(longTextAligner_Alignment_Node3);
Integer integer3 = (Integer)hashMap.get(longTextAligner_Alignment_Node2);
if (integer2 == null)
{
integer2 = Integer.valueOf(int.MaxValue);
}
if (integer3 == null)
{
integer3 = Integer.valueOf(int.MaxValue);
}
int num2 = integer3.intValue() + longTextAligner_Alignment_Node3.getValue() - num;
if (num2 < integer2.intValue())
{
hashMap.put(longTextAligner_Alignment_Node3, Integer.valueOf(num2));
priorityQueue.add(longTextAligner_Alignment_Node3);
hashMap2.put(longTextAligner_Alignment_Node3, longTextAligner_Alignment_Node2);
}
}
}
}
}
this.alignment = Collections.emptyList();
}
internal static HashMap access_400(LongTextAligner longTextAligner)
{
return(longTextAligner.tupleIndex);
}
internal static List access_300(LongTextAligner longTextAligner)
{
return(longTextAligner.reftup);
}
