public override bool Equals(object obj)
{
if (!(obj is DataOutStruct))
{
return(false);
}
DataOutStruct other = (DataOutStruct)obj;
return(Equals(other));
}
private static List <DataOutStruct> GroupNumberInitializer(Partition p, int[] cluster, String fileName,
String fileEnd,
OutType type)
{
List <DataOutStruct> dataOut = new List <DataOutStruct>();
for (int i = 0; i < p.DataCount; i++)
{
cluster[i] = -1;
}
for (int i = 0; i < p.Clusters.Count(); i++)
{
for (int j = 0; j < p.Clusters[i].Points.Count(); j++)
{
cluster[p.Clusters[i].Points[j].Id] = p.Clusters[i].Points[j].ClusterId;
}
}
for (int i = 0; i < p.DataCount; i++)
{
DataOutStruct outObj = new DataOutStruct();
outObj.Bacteria = p.Graph.Nodes[i].sharedName;
outObj.ClusterType = type.ToString();
if (cluster[i] != -1)
{
outObj.GroupNum = cluster[i].ToString();
}
else
{
outObj.GroupNum = "N/A";
}
dataOut.Add(outObj);
}
using (StreamWriter sw = new StreamWriter($"Data/{fileName}{fileEnd}"))
for (int i = 0; i < dataOut.Count(); i++)
{
{
sw.WriteLine(dataOut[i].Bacteria + "," + dataOut[i].GroupNum + "," + dataOut[i].ClusterType);
}
}
return(dataOut);
}
/// <summary>
/// G3 finds all unique singular group numbers that are
/// </summary>
public static List <DataOutStruct> G3(List <List <DataOutStruct> > initList, Partition healthyPartition,
Partition infectedPartition, OutType type)
{
List <DataOutStruct> healthy = new List <DataOutStruct>();
List <DataOutStruct> infected = new List <DataOutStruct>();
List <DataOutStruct> healthyList = new List <DataOutStruct>();
List <DataOutStruct> infectedList = new List <DataOutStruct>();
foreach (Cluster cluster in healthyPartition.Clusters)
{
if (cluster.Points.Count == 1)
{
DataOutStruct singleNode = new DataOutStruct();
singleNode.Bacteria = healthyPartition.Graph.Nodes[cluster.Points[0].Id].sharedName;
singleNode.ClusterType = type.ToString();
singleNode.GroupNum = "";
healthy.Add(singleNode);
}
}
foreach (Cluster cluster in infectedPartition.Clusters)
{
if (cluster.Points.Count == 1)
{
DataOutStruct singleNode = new DataOutStruct();
singleNode.Bacteria = infectedPartition.Graph.Nodes[cluster.Points[0].Id].sharedName;
singleNode.ClusterType = type.ToString();
singleNode.GroupNum = "";
infected.Add(singleNode);
}
}
List <String> commonHealthy =
healthy.Select(x => x.Bacteria).Intersect(initList[1].Select(i => i.Bacteria)).ToList();
List <String> commonInfected =
infected.Select(x => x.Bacteria).Intersect(initList[0].Select(i => i.Bacteria)).ToList();
infectedList = infected.Except(healthy).Distinct().Where(x => commonInfected.Any(n => n.Equals(x.Bacteria)))
.ToList();
healthyList = healthy.Except(infected).Distinct().Where(x => commonHealthy.Any(n => n.Equals(x.Bacteria)))
.ToList();
List <DataOutStruct> outList = healthyList.Union(infectedList).Distinct().OrderBy(x => x.Bacteria).ToList();
return(outList);
}
private static List <DataOutStruct> CombineOuts(LightWeightGraph healthy, LightWeightGraph infected, List <DataOutStruct> outData)
{
List <DataOutStruct> finalOut = new List <DataOutStruct>();
List <DataOutStruct> healthyNodes = new List <DataOutStruct>();
List <DataOutStruct> infectedNodes = new List <DataOutStruct>();
foreach (var node in healthy.Nodes)
{
DataOutStruct singleNode = new DataOutStruct
{
GroupNum = "0", Bacteria = node.sharedName, ClusterType = ""
};
healthyNodes.Add(singleNode);
}
foreach (var node in infected.Nodes)
{
DataOutStruct singleNode = new DataOutStruct
{
GroupNum = "0", Bacteria = node.sharedName, ClusterType = ""
};
infectedNodes.Add(singleNode);
}
foreach (DataOutStruct bacteria in outData)
{
foreach (DataOutStruct healthyNode in healthyNodes)
{
if (bacteria.Bacteria.Equals(healthyNode.Bacteria))
{
healthyNode.GroupNum = "1";
}
}
foreach (DataOutStruct infectedNode in infectedNodes)
{
if (bacteria.Bacteria.Equals(infectedNode.Bacteria))
{
infectedNode.GroupNum = "1";
}
}
}
finalOut = healthyNodes.Union(infectedNodes).Distinct().OrderByDescending(x => x.GroupNum).ThenBy(x => x.Bacteria).ToList();
return(finalOut);
}
public bool Equals(DataOutStruct other)
{
return(Bacteria == other.Bacteria && ClusterType == other.ClusterType &&
GroupNum == other.GroupNum);
}
