// function to save a given arry's bytes to file
public void SaveListToFile(string FileLocation, PointPairList list)
{
File.AppendAllText(FileLocation, Convert.ToString(DateTime.Now) + "\r\n");
File.AppendAllText(FileLocation, this.filename.Text + "\r\n");
File.AppendAllText(FileLocation, "Data from Graph" + "\r\n");
double[] SaveArray = list.Select(P => P.Y).ToArray();
Console.WriteLine("Size of SvarArray {0}", SaveArray.Length);
// Stop = true;
for (int j = 0; j < SaveArray.Length; j++)
{
string Reading = SaveArray[j].ToString() + "\r\n";
File.AppendAllText(FileLocation, Reading);
}
SumProcessedBytes1 = 0;
SumProcessedBytes2 = 0;
PreviousScreenRemainder1 = 0;
PreviousScreenRemainder2 = 0;
AverageIndex1 = 1;
AverageIndex2 = 1;
list1.Clear();
list2.Clear();
Array.Clear(ScreenBuffer, 0, ScreenBuffer.Length);
COPY_POS = 0;
CreateGraph(zgc);
}
public void UpdateGraph()
{
zedGraphControl.GraphPane.CurveList.Clear();
zedGraphControl.GraphPane.GraphObjList.Clear();
if (!(bindingSource.Current is DataRow))
{
return;
}
var currentRow = (DataRow) bindingSource.Current;
var alignedFile = currentRow.AlignedRetentionTimes;
if (alignedFile == null)
{
zedGraphControl.GraphPane.Title.Text = Resources.AlignmentForm_UpdateGraph_Waiting_for_retention_time_alignment;
return;
}
var points = new PointPairList();
var outliers = new PointPairList();
var peptideTimes = alignedFile.Regression.PeptideTimes;
for (int i = 0; i < peptideTimes.Count; i++)
{
var peptideTime = peptideTimes[i];
var point = new PointPair(alignedFile.OriginalTimes[peptideTime.PeptideSequence],
peptideTime.RetentionTime,
peptideTime.PeptideSequence);
if (alignedFile.OutlierIndexes.Contains(i))
{
outliers.Add(point);
}
else
{
points.Add(point);
}
}
var goodPointsLineItem = new LineItem("Peptides", points, Color.Black, SymbolType.Diamond) // Not L10N?
{
Symbol = {Size = 8f},
Line = {IsVisible = false}
};
goodPointsLineItem.Symbol.Border.IsVisible = false;
goodPointsLineItem.Symbol.Fill = new Fill(RTLinearRegressionGraphPane.COLOR_REFINED);
if (outliers.Count > 0)
{
var outlierLineItem = zedGraphControl.GraphPane.AddCurve(Resources.AlignmentForm_UpdateGraph_Outliers, outliers, Color.Black,
SymbolType.Diamond);
outlierLineItem.Symbol.Size = 8f;
outlierLineItem.Line.IsVisible = false;
outlierLineItem.Symbol.Border.IsVisible = false;
outlierLineItem.Symbol.Fill = new Fill(RTLinearRegressionGraphPane.COLOR_OUTLIERS);
goodPointsLineItem.Label.Text = Resources.AlignmentForm_UpdateGraph_Peptides_Refined;
}
zedGraphControl.GraphPane.CurveList.Add(goodPointsLineItem);
if (points.Count > 0)
{
double xMin = points.Select(p => p.X).Min();
double xMax = points.Select(p => p.X).Max();
var regression = alignedFile.RegressionRefined ?? alignedFile.Regression;
var regressionLine = zedGraphControl.GraphPane
.AddCurve(Resources.AlignmentForm_UpdateGraph_Regression_line, new[] { xMin, xMax },
new[] { regression.Conversion.GetY(xMin), regression.Conversion.GetY(xMax) },
Color.Black);
regressionLine.Symbol.IsVisible = false;
}
zedGraphControl.GraphPane.Title.Text = string.Format(Resources.AlignmentForm_UpdateGraph_Alignment_of__0__to__1_,
currentRow.DataFile,
currentRow.Target.Name);
zedGraphControl.GraphPane.XAxis.Title.Text = string.Format(Resources.AlignmentForm_UpdateGraph_Time_from__0__,
currentRow.DataFile);
zedGraphControl.GraphPane.YAxis.Title.Text = Resources.AlignmentForm_UpdateGraph_Aligned_time;
zedGraphControl.GraphPane.AxisChange();
zedGraphControl.Invalidate();
}
// function to save a given arry's bytes to file
public void SaveListToFile(string FileLocation, PointPairList list)
{
MetaData(1)[4] = this.filename.Text;
File.AppendAllText(FileLocation, "Data from LHS Graph" + "\r\n");
File.AppendAllText(FileLocation, MetaData(1)[0] + "\r\n");
File.AppendAllText(FileLocation, MetaData(1)[1] + "\r\n");
File.AppendAllText(FileLocation, MetaData(1)[2] + "\r\n");
File.AppendAllText(FileLocation, MetaData(1)[3] + "\r\n");
File.AppendAllText(FileLocation, MetaData(1)[4] + "\r\n");
double[] SaveArray = list.Select(P => P.Y).ToArray();
Console.WriteLine("Size of SvarArray {0}", SaveArray.Length);
// Stop = true;
for (int j = 0; j < SaveArray.Length; j++)
{
string Reading = SaveArray[j].ToString() + "\r\n";
File.AppendAllText(FileLocation, Reading);
}
}
// function to save a given list's values to file
public void SaveListToFile(string FileLocation, PointPairList list, int Pane)
{
MetaData(1)[4] = this.filedescription.Text;
//Add some MetaData at beginning of file
File.AppendAllText(FileLocation, MetaData(Pane)[0] + "\r\n");
File.AppendAllText(FileLocation, MetaData(Pane)[1] + "\r\n");
File.AppendAllText(FileLocation, MetaData(Pane)[2] + "\r\n");
File.AppendAllText(FileLocation, MetaData(Pane)[3] + "\r\n");
File.AppendAllText(FileLocation, MetaData(Pane)[4] + "\r\n");
//List converted to array for saving
double[][] SaveArray = new double[Convert.ToInt32(list.LongCount())][];
SaveArray[0] = list.Select(P => P.X).ToArray();
SaveArray[1] = list.Select(P => P.Y).ToArray();
for (int j = 0; j < SaveArray.Length; j++)
{
string Reading = SaveArray[0][j].ToString() + "\t" + SaveArray[1][j] + "\r\n";
File.AppendAllText(FileLocation, Reading);
}
}
// function to save both graphs' data
public void SaveBothListsToFile(string FileLocation, PointPairList listA, PointPairList listB)
{
MetaData(1)[4] = this.filedescription.Text;
string LHSfile = FileLocation + "Pane1.txt";
string RHSfile = FileLocation + "Pane2.txt";
File.AppendAllText(LHSfile, "Data from Pane1 Graph" + "\r\n");
File.AppendAllText(LHSfile, MetaData(1)[0] + "\r\n");
File.AppendAllText(LHSfile, MetaData(1)[1] + "\r\n");
File.AppendAllText(LHSfile, MetaData(1)[2] + "\r\n");
File.AppendAllText(LHSfile, MetaData(1)[3] + "\r\n");
File.AppendAllText(LHSfile, MetaData(1)[4] + "\r\n");
// Array of values to be saved (LHS Graph)
double[][] SaveArray1 = new double[Convert.ToInt32(listA.LongCount())][];
SaveArray1[0] = listA.Select(P => P.X).ToArray();
SaveArray1[1] = listA.Select(P => P.Y).ToArray();
for (int j = 0; j < SaveArray1.Length; j++)
{
string Reading = SaveArray1[0][j].ToString() + "\t" + SaveArray1[1][j] + "\r\n";
File.AppendAllText(LHSfile, Reading);
}
File.AppendAllText(RHSfile, "Data from Pane2 Graph" + "\r\n");
File.AppendAllText(RHSfile, MetaData(2)[0] + "\r\n");
File.AppendAllText(RHSfile, MetaData(2)[1] + "\r\n");
File.AppendAllText(RHSfile, MetaData(2)[2] + "\r\n");
File.AppendAllText(RHSfile, MetaData(2)[3] + "Environment time = " + Convert.ToString(Environment.TickCount - tickStart) + "\r\n");
File.AppendAllText(RHSfile, MetaData(2)[4] + "\r\n");
double[][] SaveArray2 = new double[Convert.ToInt32(listB.LongCount())][];
SaveArray2[0] = listB.Select(P => P.X).ToArray();
SaveArray2[1] = listB.Select(P => P.Y).ToArray();
for (int j = 0; j < SaveArray2.Length; j++)
{
string Reading = SaveArray2[0][j].ToString() + "\t" + SaveArray2[1][j].ToString() + "\r\n";
File.AppendAllText(RHSfile, Reading);
}
Reset(zgc);
Reset(Window2.zgc2);
}
// function to save a given list's values to file
public void SaveListToFile(string FileLocation, PointPairList list, int Pane)
{
File.AppendAllText(FileLocation, MetaData(Pane)[0] + "\r\n");
File.AppendAllText(FileLocation, MetaData(Pane)[1] + "\r\n");
File.AppendAllText(FileLocation, MetaData(Pane)[2] + "\r\n");
File.AppendAllText(FileLocation, MetaData(Pane)[3] + "\r\n");
File.AppendAllText(FileLocation, MetaData(Pane)[4] + "\r\n");
double[][] SaveArray = new double[Convert.ToInt32(list.LongCount())][];
SaveArray[0] = list.Select(P => P.X).ToArray();
SaveArray[1] = list.Select(P => P.Y).ToArray();
for (int j = 0; j < SaveArray.Length; j++)
{
string Reading = SaveArray[0][j].ToString() + "\t" + SaveArray[1][j] + "\r\n";
File.AppendAllText(FileLocation, Reading);
}
}
