public void SetResults(PanelSetOrderHer2AmplificationByFish panelSetOrderHer2AmplificationByFish)
{
panelSetOrderHer2AmplificationByFish.Result = this.m_Result;
if (string.IsNullOrEmpty(panelSetOrderHer2AmplificationByFish.AverageHER2SignalsPerNucleus) == false) this.m_Interpretation = this.m_Interpretation.Replace("$AVGHER2SIGNALS$", panelSetOrderHer2AmplificationByFish.AverageHER2SignalsPerNucleus);
if (string.IsNullOrEmpty(panelSetOrderHer2AmplificationByFish.AverageCEN17SignalsPerNucleus) == false) this.m_Interpretation = this.m_Interpretation.Replace("$AVGCEN17SIGNALS$", panelSetOrderHer2AmplificationByFish.AverageCEN17SignalsPerNucleus);
if (string.IsNullOrEmpty(panelSetOrderHer2AmplificationByFish.HER2CEN17SignalRatio) == false) this.m_Interpretation = this.m_Interpretation.Replace("$HER2CEN17SIGNALRATIO$", panelSetOrderHer2AmplificationByFish.HER2CEN17SignalRatio);
panelSetOrderHer2AmplificationByFish.Interpretation = this.m_Interpretation;
panelSetOrderHer2AmplificationByFish.Comment = this.m_Comment;
panelSetOrderHer2AmplificationByFish.Reference = this.m_Reference;
panelSetOrderHer2AmplificationByFish.ReferenceRanges = Her2AmplificationByFishResult.ReferenceRanges;
panelSetOrderHer2AmplificationByFish.NucleiScored = Her2AmplificationByFishResult.NucleiScored;
}
public void SetResults(PanelSetOrderHer2AmplificationByFish panelSetOrderHer2AmplificationByFish)
{
panelSetOrderHer2AmplificationByFish.Result = this.m_Result;
if (string.IsNullOrEmpty(panelSetOrderHer2AmplificationByFish.AverageHER2SignalsPerNucleus) == false)
{
this.m_Interpretation = this.m_Interpretation.Replace("$AVGHER2SIGNALS$", panelSetOrderHer2AmplificationByFish.AverageHER2SignalsPerNucleus);
}
if (string.IsNullOrEmpty(panelSetOrderHer2AmplificationByFish.AverageCEN17SignalsPerNucleus) == false)
{
this.m_Interpretation = this.m_Interpretation.Replace("$AVGCEN17SIGNALS$", panelSetOrderHer2AmplificationByFish.AverageCEN17SignalsPerNucleus);
}
if (string.IsNullOrEmpty(panelSetOrderHer2AmplificationByFish.HER2CEN17SignalRatio) == false)
{
this.m_Interpretation = this.m_Interpretation.Replace("$HER2CEN17SIGNALRATIO$", panelSetOrderHer2AmplificationByFish.HER2CEN17SignalRatio);
}
panelSetOrderHer2AmplificationByFish.Interpretation = this.m_Interpretation;
panelSetOrderHer2AmplificationByFish.Comment = this.m_Comment;
panelSetOrderHer2AmplificationByFish.Reference = this.m_Reference;
panelSetOrderHer2AmplificationByFish.ReferenceRanges = Her2AmplificationByFishResult.ReferenceRanges;
panelSetOrderHer2AmplificationByFish.NucleiScored = Her2AmplificationByFishResult.NucleiScored;
}
public override void Render()
{
PanelSetOrderHer2AmplificationByFish panelSetOrderHer2AmplificationByFish = (PanelSetOrderHer2AmplificationByFish)this.m_PanelSetOrder;
if (panelSetOrderHer2AmplificationByFish.NonBreast == false)
{
this.m_TemplateName = @"\\CFileServer\Documents\ReportTemplates\XmlTemplates\HER2AmplificationByFish.6.xml";
}
else
{
this.m_TemplateName = @"\\CFileServer\Documents\ReportTemplates\XmlTemplates\HER2AmplificationByFishNonBreast.6.xml";
}
base.OpenTemplate();
this.SetDemographicsV2();
this.SetReportDistribution();
this.SetCaseHistory();
if (this.m_AccessionOrder.OrderCancelled == false)
{
YellowstonePathology.Business.Document.AmendmentSection amendmentSection = new YellowstonePathology.Business.Document.AmendmentSection();
amendmentSection.SetAmendment(m_PanelSetOrder.AmendmentCollection, this.m_ReportXml, this.m_NameSpaceManager, true);
YellowstonePathology.Business.Specimen.Model.SpecimenOrder specimenOrder = this.m_AccessionOrder.SpecimenOrderCollection.GetSpecimenOrder(this.m_PanelSetOrder.OrderedOn, this.m_PanelSetOrder.OrderedOnId);
string collectionDateTimeString = YellowstonePathology.Business.Helper.DateTimeExtensions.CombineDateAndTime(specimenOrder.CollectionDate, specimenOrder.CollectionTime);
this.SetXmlNodeData("date_time_collected", collectionDateTimeString);
this.SetXmlNodeData("test_result", panelSetOrderHer2AmplificationByFish.Result);
if (string.IsNullOrEmpty(panelSetOrderHer2AmplificationByFish.HER2CEN17SignalRatio) == false)
{
this.SetXmlNodeData("test_ratio", "Ratio = " + panelSetOrderHer2AmplificationByFish.HER2CEN17SignalRatio);
}
else
{
this.SetXmlNodeData("test_ratio", string.Empty);
}
this.SetXmlNodeData("averageher2_copynumber", "Average HER2 Copy Number = " + panelSetOrderHer2AmplificationByFish.AverageHER2SignalsPerNucleus);
this.SetXmlNodeData("final_date", BaseData.GetShortDateString(this.m_PanelSetOrder.ReferenceLabFinalDate));
this.SetXmlNodeData("result_comment", panelSetOrderHer2AmplificationByFish.Comment);
this.SetXmlNodeData("cell_cnt", panelSetOrderHer2AmplificationByFish.NucleiScored);
this.SetXmlNodeData("avg_her", panelSetOrderHer2AmplificationByFish.AverageHER2SignalsPerNucleus);
this.SetXmlNodeData("avg_chr", panelSetOrderHer2AmplificationByFish.AverageCEN17SignalsPerNucleus);
this.SetXmlNodeData("tst_ratio", panelSetOrderHer2AmplificationByFish.HER2CEN17SignalRatio);
this.SetXmlNodeData("report_reference_ranges", panelSetOrderHer2AmplificationByFish.ReferenceRanges);
XmlNode tableNode = this.m_ReportXml.SelectSingleNode("descendant::w:tbl[w:tr/w:tc/w:p/w:r/w:t='report_interpretation']", this.m_NameSpaceManager);
this.SetXMLNodeParagraphDataNode(tableNode, "report_interpretation", panelSetOrderHer2AmplificationByFish.Interpretation);
YellowstonePathology.Business.Test.AliquotOrder aliquotOrder = this.m_AccessionOrder.SpecimenOrderCollection.GetAliquotOrder(this.m_PanelSetOrder.OrderedOnId);
string blockDescription = string.Empty;
if (aliquotOrder != null)
{
blockDescription = " - Block " + aliquotOrder.Label;
}
SetXmlNodeData("specimen_type", specimenOrder.Description + blockDescription);
SetXmlNodeData("specimen_fixation", specimenOrder.LabFixation);
SetXmlNodeData("time_to_fixation", specimenOrder.TimeToFixationHourString);
this.SetXmlNodeData("report_reference", panelSetOrderHer2AmplificationByFish.Reference);
SetXmlNodeData("duration_of_fixation", specimenOrder.FixationDurationString);
if (panelSetOrderHer2AmplificationByFish.Result != "NOT INTERPRETABLE")
{
this.SetXmlNodeData("fixation_comment", specimenOrder.FixationComment);
}
else
{
this.DeleteRow("fixation_comment");
SetXmlNodeData("avg_her", string.Empty);
SetXmlNodeData("tst_ratio", string.Empty);
}
SetXmlNodeData("date_time_collected", collectionDateTimeString);
SetXmlNodeData("report_distribution", "No Distribution Selected");
this.ReplaceText("pathologist_signature", this.m_PanelSetOrder.ReferenceLabSignature);
}
else
{
this.SetXmlNodeData("result_comment", panelSetOrderHer2AmplificationByFish.Comment);
this.SetXmlNodeData("final_date", BaseData.GetShortDateString(this.m_PanelSetOrder.ReferenceLabFinalDate));
}
this.SaveReport();
}
public override void ToXml(XElement document)
{
PanelSetOrderHer2AmplificationByFish panelSetOrder = (PanelSetOrderHer2AmplificationByFish)this.m_AccessionOrder.PanelSetOrderCollection.GetPanelSetOrder(this.m_ReportNo);
this.AddHeader(document, panelSetOrder, "HER2 Gene Amplification");
this.AddNextObxElement("", document, "F");
this.AddNextObxElement("HER2: " + panelSetOrder.Result, document, "F");
this.AddNextObxElement("Ratio: " + panelSetOrder.HER2CEN17SignalRatio, document, "F");
this.AddNextObxElement("Average HER2 Copy Number = " + panelSetOrder.AverageHER2SignalsPerNucleus, document, "F");
this.AddNextObxElement(string.Empty, document, "F");
this.AddNextObxElement("Reference Range: " + panelSetOrder.ReferenceRanges, document, "F");
if (string.IsNullOrEmpty(panelSetOrder.Comment) != true)
{
this.HandleLongString("Comment: " + panelSetOrder.Comment, document, "F");
}
this.AddNextObxElement(string.Empty, document, "F");
this.AddNextObxElement("Pathologist: " + panelSetOrder.Signature, document, "F");
if (panelSetOrder.FinalTime.HasValue == true)
{
this.AddNextObxElement("E-signed " + panelSetOrder.FinalTime.Value.ToString("MM/dd/yyyy HH:mm"), document, "F");
}
this.AddNextObxElement(string.Empty, document, "F");
this.AddAmendments(document);
this.AddNextObxElement("Number of invasive tumor cells counted: " + panelSetOrder.NucleiScored, document, "F");
this.AddNextObxElement("HER2 average copy number per nucleus: " + panelSetOrder.AverageHER2SignalsPerNucleus, document, "F");
this.AddNextObxElement("Chr17 average copy number per nucleus: " + panelSetOrder.AverageCEN17SignalsPerNucleus, document, "F");
this.AddNextObxElement("Ratio of average HER2/Chr17 signals: " + panelSetOrder.HER2CEN17SignalRatio, document, "F");
this.AddNextObxElement(string.Empty, document, "F");
YellowstonePathology.Business.Specimen.Model.SpecimenOrder specimenOrder = this.m_AccessionOrder.SpecimenOrderCollection.GetSpecimenOrder(panelSetOrder.OrderedOn, panelSetOrder.OrderedOnId);
YellowstonePathology.Business.Test.AliquotOrder aliquotOrder = (YellowstonePathology.Business.Test.AliquotOrder) this.m_AccessionOrder.SpecimenOrderCollection.GetOrderTarget(panelSetOrder.OrderedOnId);
string specimenDescriptionString = specimenOrder.Description + " - " + aliquotOrder.Label;
this.AddNextObxElement("Specimen Description: " + specimenDescriptionString, document, "F");
this.AddNextObxElement("Fixation Type: " + specimenOrder.LabFixation, document, "F");
this.AddNextObxElement("Time to fixation: " + specimenOrder.TimeToFixationHourString, document, "F");
this.AddNextObxElement("Duration of fixation: " + specimenOrder.FixationDurationString, document, "F");
this.AddNextObxElement(string.Empty, document, "F");
this.AddNextObxElement("Interpretation: ", document, "F");
this.HandleLongString(panelSetOrder.Interpretation, document, "F");
this.AddNextObxElement(string.Empty, document, "F");
this.AddNextObxElement("Method: ", document, "F");
string method = System.Security.SecurityElement.Escape("This test was performed using a molecular method, In Situ Hybridization (ISH) with the US FDA approved Inform HER2 DNA probe kit, modified to report results according to ASCO/CAP guidelines. The test was performed on paraffin embedded tissue in compliance with ASCO/CAP guidelines. Probes used include a locus specific probe for HER2 and an internal hybridization control probe for the centromeric region of chromosome 17 (Chr17).");
this.HandleLongString(method, document, "F");
this.AddNextObxElement(string.Empty, document, "F");
this.AddNextObxElement("References: ", document, "F");
this.HandleLongString(panelSetOrder.Reference, document, "F");
this.AddNextObxElement(string.Empty, document, "F");
YellowstonePathology.Business.Amendment.Model.AmendmentCollection amendmentCollection = this.m_AccessionOrder.AmendmentCollection.GetAmendmentsForReport(panelSetOrder.ReportNo);
foreach (YellowstonePathology.Business.Amendment.Model.Amendment amendment in amendmentCollection)
{
this.AddNextObxElement(amendment.AmendmentType + ": " + amendment.AmendmentDate.Value.ToString("MM/dd/yyyy"), document, "C");
this.HandleLongString(amendment.Text, document, "C");
if (amendment.RequirePathologistSignature == true)
{
this.AddNextObxElement("Signature: " + amendment.PathologistSignature, document, "C");
}
this.AddNextObxElement("", document, "C");
}
string ldtComment = "This test was performed using a US FDA approved DNA probe kit, modified to report results according to ASCO/CAP guidelines, and the modified procedure was validated by Yellowstone Pathology Institute (YPI). YPI assumes the responsibility for test performance.";
this.HandleLongString(ldtComment, document, "F");
string locationPerformed = panelSetOrder.GetLocationPerformedComment();
this.AddNextObxElement(locationPerformed, document, "F");
this.AddNextObxElement(string.Empty, document, "F");
}
