private bool AddSmpXToList( ArrayList Samples)
{
int Count = 0;
int SmpCounter = 0;
ArrayList Nums = new ArrayList();
ArrayList SmpsToAdd = new ArrayList();
ModeLabel.Text = "Inserting SMP's into upload list.";
this.Refresh();
foreach (Sample Sample in Samples) {
if (Sample.QCType == Sample.QCTYPES.Dup) {
SmpCounter++; //= Sample.QCSet;
int MetalCounter = 0;
string SmpName = "QC " + ((Analyte)Sample.Metals[MetalCounter]).AtomName + " Smp " + (Sample.QCsetRv[SmpCounter]);
Sample SmpX = new Sample(SmpName,
((Sample)Samples[Count - 1]).SampleDateTimeFromFile,
((Sample)Samples[Count - 1]).TimeRun,
((Sample)Samples[Count - 1]).DateRun,
((Sample)Samples[Count - 1]).DateTimeInSQL,
((Sample)Samples[Count - 1]).AuditTimeinSQL);
Nums.Add(Count);
SmpX.SampleNameBackup = SmpName;
SmpX.DayOfSample = Sample.DayOfSample;
SmpX.MonthOfSample = Sample.MonthOfSample;
SmpX.IsQc = true;
SmpX.is_CCB_QCI = false;
SmpX.IsQCSTD2 = false;
SmpX.QCType = Sample.QCTYPES.Smp;
foreach (Analyte Metal in Sample.Metals) {
string MetalSmpName = "QC " + ((Analyte)Sample.Metals[MetalCounter]).AtomName + " Smp " + (Sample.QCsetRv[SmpCounter]);
Analyte MetaltoAdd = new Analyte(MetalSmpName,
Metal.AtomName,
Metal.MeasIntensityMean,
Metal.NetIntensityMean,
Metal.ConcRSD,
Metal.ConcMean,
Metal.ReportUnits,
Metal.YpercRec,
Metal.QCStdPercRec,
Metal.SpkPercRec,
Metal.IntStdSymb,
Metal.IntStdRec);
MetaltoAdd.FoundVarID = FindVardesc(MetalSmpName);
MetaltoAdd.SampleNameForUpload = MetalSmpName;
SmpX.Metals.Add(MetaltoAdd);
Metal.DO_NOT_UPLOAD = false;
Metal.WasFoundinDB = true;
Metal.Ready2Upload = true;
MetalCounter++;
}
SmpsToAdd.Add(SmpX);
}
Count++;
}
int Counter = 0;
if (Nums.Count != 0) {
foreach (int Index in Nums) {
Sample Ref = (Sample)SmpsToAdd[Counter];
Samples.Insert(Index + Counter, Ref );
Counter++;
}
}
if (Counter > 0) return true;
else return false;
}
private static Double Fixit( Analyte Item)
{
double Value = 999.99;
try {
Value = Convert.ToDouble(Item.QCStdPercRec);
}
catch (Exception e) {
Value = 999.99;
string DebugMemoryString = e.Message.ToString();
}
return Value;
}
private static bool ParseElanFile( string myFile, ArrayList FileData, ArrayList Samples)
{
Form1.FileData = ReadPerkinElmerFile(myFile);
try { Samples.Clear(); }
catch (Exception ex) { ErrorLog += ex.Message.ToString() + " : Prior null assignment to Samples \n"; Samples = new ArrayList(); }
ModeLabel.Text = "Parsing now.";
int LineNum = 0;
int SampleCounter = 0;
bool MetalsHit = false;
if (FileData.Count > 0) {
string[] SplitMe;
while (LineNum < FileData.Count-1) {
Sample Group = new Sample();
MetalsHit = false;
do
{
SplitMe = FileData[LineNum].ToString().Split(",".ToArray());
SplitMe = RemoveSlashs(SplitMe);
if (SplitMe[0] == "Method 200.8-Summary Report") { goto nextline; }
if (SplitMe[0] == "Sample ID:") {
Group.SampleName = SplitMe[1];
Group.SampleNameBackup = SplitMe[1];
}
if (SplitMe[0] == "Sample Date/Time:") {
if(SplitMe.Count()>3) {
string FullDateTime = SplitMe[1] + SplitMe[2] + SplitMe[3];
DateTime Parsed = DateTime.Parse(FullDateTime);
Group.SampleDateTimeFromFile = Parsed.ToString();//SplitMe[1];
Group.TimeRun = Parsed.ToShortTimeString();
}
}
if (SplitMe[0] == "Sample Description:") {
if (SplitMe.Count() > 1) {
Group.SampleDescription = SplitMe[1];
}
}
if (SplitMe[0] == "Number of Replicates:") {
if (SplitMe.Count() > 1) {
Group.NumberReplicates = SplitMe[1];
}
}
if (SplitMe[0] == "Method File:") {
if (SplitMe.Count() > 1){
Group.MethodFile = SplitMe[1];
}
}
if (SplitMe[0] == "Dataset File:") {
if (SplitMe.Count() > 1) {
Group.DatasetFile = SplitMe[1];
}
}
if (SplitMe[0] == "Optimization File:") {
if (SplitMe.Count() > 1) {
Group.OptimusFile = SplitMe[1];
}
}
if (SplitMe[0] == "Tuning File:") {
if (SplitMe.Count() > 1) {
Group.TuneFile = SplitMe[1];
}
}
if (SplitMe[0] == "Sample Prep Volume (mL):") {
if (SplitMe.Count() > 1) {
Group.SamplePrepVolume = SplitMe[1];
}
}
if (SplitMe[0] == "Initial Sample Quantity (mg):") {
if (SplitMe.Count() > 1) {
Group.InitalSampleQuanity = SplitMe[1];
}
}
if (SplitMe[0] == "Aliquot Volume (mL):") {
if (SplitMe.Count() > 1) {
Group.AliquotVolume = SplitMe[1];
}
}
if (SplitMe[0] == "Diluted to Volume (mL):") {
if (SplitMe.Count() > 1) {
Group.DilutedtoVolume = SplitMe[1];
}
}
if (SplitMe[0] == "Concentration Results") {
LineNum++;
int NumAnalytes = 0;
SplitMe = FileData[LineNum].ToString().Split(",".ToArray());
SplitMe = RemoveSlashs(SplitMe);
Establish_AnalyteFields(SplitMe);
if ((SplitMe[0] == "Analyte") && (SplitMe[1] == "Mass") && (SplitMe[ReturnAnalyteEnumeration(AnalyteFields.MeasIntensMean)] == "Meas. Intens. Mean")) {
while ((SplitMe[0] != "Method 200.8-Summary Report") && (SplitMe[2] != "QC Calculated Values") && (LineNum < FileData.Count - 1)) {
Analyte NewAnalyte = new Analyte();
MetalsHit = true;
LineNum++;
SplitMe = FileData[LineNum].ToString().Split(",".ToArray());
SplitMe = RemoveSlashs(SplitMe);
if (SplitMe[0] == "QC Calculated Values") { goto Nextsection; }
if (SplitMe[0] == "Method 200.8-Summary Report") { goto endsample; }
if (SplitMe.Count() > 1) {
NewAnalyte.AtomName = SplitMe[ReturnAnalyteEnumeration(AnalyteFields.Name)];
NewAnalyte.AtomName = NewAnalyte.AtomName.TrimStart("\"".ToArray());
NewAnalyte.AtomName = NewAnalyte.AtomName.TrimEnd("\"".ToArray());
NewAnalyte.Mass = SplitMe[ReturnAnalyteEnumeration(AnalyteFields.Mass)];
NewAnalyte.Mass = NewAnalyte.Mass.Trim();
NewAnalyte.MeasIntensityMean = SplitMe[ReturnAnalyteEnumeration(AnalyteFields.MeasIntensMean)];
NewAnalyte.MeasIntensityMean = NewAnalyte.MeasIntensityMean.Trim();
NewAnalyte.NetIntensityMean = SplitMe[ReturnAnalyteEnumeration(AnalyteFields.NetIntensMean)];
NewAnalyte.NetIntensityMean = NewAnalyte.NetIntensityMean.Trim();
//NewAnalyte.ConcRSD = SplitMe[(int)AnalyteFields.ConcRSD];
//NewAnalyte.ConcRSD = NewAnalyte.ConcRSD.Trim();
NewAnalyte.ConcMean = SplitMe[ReturnAnalyteEnumeration(AnalyteFields.ConcMean)];
NewAnalyte.ConcMean = NewAnalyte.ConcMean.Trim();
NewAnalyte.ReportUnits = SplitMe[ReturnAnalyteEnumeration(AnalyteFields.ReportUnit)];
NewAnalyte.ReportUnits = NewAnalyte.ReportUnits.Trim();
}
if (SplitMe[0] != "Method 200.8-Summary Report") {
NumAnalytes++;
Group.Metals.Add(NewAnalyte);
}
}
if (SplitMe[0] == "Method 200.8-Summary Report") { goto endsample; }
Nextsection: ;
if (LineNum < FileData.Count-1) LineNum++;
else return false;
int Counter = 0;
for (; Counter < NumAnalytes; Counter++) {
if ((Counter <= NumAnalytes) && (LineNum < FileData.Count-1)) {
SplitMe = FileData[LineNum].ToString().Split(",".ToArray());
SplitMe = RemoveSlashs(SplitMe);
Establish_QCPercFields(SplitMe);
if (SplitMe[0] == "Method 200.8-Summary Report") { goto endsample; }
if (SplitMe.Count() > 1) {
if (((Analyte)Group.Metals[Counter]).AtomName == SplitMe[0]) {
((Analyte)Group.Metals[Counter]).QCStdPercRec = SplitMe[ReturnQCEnumeration(QCPercFields.QCStdPercRecovery)];
((Analyte)Group.Metals[Counter]).QCStdPercRec = ((Analyte)Group.Metals[Counter]).QCStdPercRec.TrimStart("\0".ToArray());
((Analyte)Group.Metals[Counter]).SpkPercRec = SplitMe[ReturnQCEnumeration(QCPercFields.SpikePercRecovery)];
//((Analyte)Group.Metals[Counter]).IntStdSymb = SplitMe[(int)QCPercFields.InternalStandardSymbol];
if (SplitMe.Count() == 7)
{
((Analyte)Group.Metals[Counter]).IntStdRec = SplitMe[ReturnQCEnumeration(QCPercFields.IntStdPercRecovery)];
}
}
else Counter--;
}
if(Counter<NumAnalytes)LineNum++;
}
}
}
}
nextline: ;
if(!MetalsHit)LineNum++;
if (LineNum < (FileData.Count - 1)) {
SplitMe = FileData[LineNum].ToString().Split(",".ToArray());
SplitMe = RemoveSlashs(SplitMe);
}
endsample: ;
if(LineNum>FileData.Count-1){ goto breakout;}
} while ((SplitMe[0] != "Method 200.8-Summary Report") && (LineNum<FileData.Count-1));
breakout: Samples.Add(Group);
SampleCounter++;
}
return true;
}
else return false;
}
