internal static KeyValuePair <MerAndHlaToLength, bool> GetRandomInstance(MerAndHlaToLength[] originalTrainingKeysAsArray, bool label, Random random)
{
MerAndHlaToLength hlaModel = originalTrainingKeysAsArray[random.Next(originalTrainingKeysAsArray.Length)];
MerAndHlaToLength aMerAndHlaToLength = new MerAndHlaToLength();
aMerAndHlaToLength.HlaToLength = hlaModel.HlaToLength;
//aMerAndHlaToLength.Study = hlaModel.Study;
aMerAndHlaToLength.KmerDefinition = hlaModel.KmerDefinition;
int merLength = hlaModel.Mer.Length;
char[] rgchMer = new char[hlaModel.Mer.Length];
for (int iMer = 0; iMer < rgchMer.Length; ++iMer)
{
MerAndHlaToLength merModel = originalTrainingKeysAsArray[random.Next(originalTrainingKeysAsArray.Length)];
SpecialFunctions.CheckCondition(merLength == merModel.Mer.Length); //!!!raise error - the selection will not be uniform unless all are off the same length
rgchMer[iMer] = merModel.Mer[random.Next(merLength)];
}
aMerAndHlaToLength.Mer = new string(rgchMer);
KeyValuePair <MerAndHlaToLength, bool> aMerAndHlaToLengthWithLabel
= new KeyValuePair <MerAndHlaToLength, bool>(aMerAndHlaToLength, label);
return(aMerAndHlaToLengthWithLabel);
}
public static MerAndHlaToLength GetInstance(string aaSequence, HlaToLength aHlaToLength, KmerDefinition kmerDefinition)
{
SpecialFunctions.CheckCondition(aaSequence.Length > 0 && char.IsUpper(aaSequence[0])); //Spot check that all upper
MerAndHlaToLength aMerAndHlaToLength = new MerAndHlaToLength();
aMerAndHlaToLength.Mer = aaSequence;
aMerAndHlaToLength.HlaToLength = aHlaToLength;
//aMerAndHlaToLength.Study = study;
aMerAndHlaToLength.KmerDefinition = kmerDefinition;
return(aMerAndHlaToLength);
}
public override bool Equals(object obj)
{
MerAndHlaToLength other = obj as MerAndHlaToLength;
if (other == null)
{
return(false);
}
else
{
//SpecialFunctions.CheckCondition(Study == other.Study); //!!!raise error
SpecialFunctions.CheckCondition(KmerDefinition.ToString() == other.KmerDefinition.ToString()); //!!!raise error
bool b = other.Mer == Mer &&
other.HlaToLength == HlaToLength;
return(b);
}
}