private PhyloTreeNode(PhyloTreeNode parent, DnaSequence dnaSequence)
{
this.dnaSequence = dnaSequence;
double timeToEvolve = ExponentialDistribution.randomExponential.NextDouble();
this.creationTime = parent.GetTimeFromStart();
this.timeFromStart = parent.GetTimeFromStart() + timeToEvolve;
this.childrenNodes = new List <PhyloTreeNode>();
NodeEvolutionScheduler.scheduler.ScheduleNodeEvolution(this, timeToEvolve);
}
public void ScheduleNodeEvolution(PhyloTreeNode node, double timeToEvolve)
{
if (this.SchedulerActive)
{
Timer evolutionTimer = new Timer(timeToEvolve);
evolutionTimer.Elapsed += new ElapsedEventHandler(node.EvolveNodeCallback);
evolutionTimer.AutoReset = false;
evolutionTimer.Enabled = true;
this.timers.Add(evolutionTimer);
}
}
private string PrintTreeRecursive(PhyloTreeNode node, int depthLevel)
{
string partialString = new string(' ', depthLevel);
List <PhyloTreeNode> children = node.GetChildrenNodes();
partialString += $"-{node.GetNodeSequence()}; Edge: {node.creationTime}ms\n";
foreach (var childNode in children)
{
partialString += this.PrintTreeRecursive(childNode, depthLevel + 1);
}
return(partialString);
}
public PhyloTree(DnaSequence rootDnaSequence)
{
this.rootNode = new PhyloTreeNode(rootDnaSequence);
}