public static ImportFileResult ImportFile(string _filename, TaxonSearch _searchTool, bool _logFoundTaxon = true)
{
ImportFileResult result = new ImportFileResult();
List <string> notFound = new List <string>();
List <Tuple <string, TaxonTreeNode> > found = new List <Tuple <string, TaxonTreeNode> >();
using (StreamReader file = new StreamReader(_filename))
{
string line;
while ((line = file.ReadLine()) != null)
{
if (string.IsNullOrWhiteSpace(line))
{
continue;
}
TaxonTreeNode node = _searchTool.FindOne(line);
if (node == null)
{
notFound.Add(line);
}
else
{
found.Add(new Tuple <string, TaxonTreeNode>(line, node));
}
}
}
result.LogFilename = _filename.Replace(".txt", "") + "_import.log";
using (StreamWriter log = new StreamWriter(result.LogFilename))
{
log.WriteLine("Import " + _filename + " results");
log.WriteLine("");
log.WriteLine(found.Count + " taxons found");
log.WriteLine(notFound.Count + " taxons not found");
log.WriteLine("");
log.WriteLine("Not found:");
foreach (string name in notFound)
{
log.WriteLine(" " + name);
}
log.WriteLine("");
if (_logFoundTaxon)
{
log.WriteLine("Found:");
foreach (Tuple <string, TaxonTreeNode> tuple in found)
{
log.WriteLine(" " + tuple.Item1 + " ==> " + tuple.Item2.GetHierarchicalName());
}
}
log.WriteLine("");
}
result.TaxonsFound = found.Count;
result.TaxonNotFound = notFound.Count;
Dictionary <TaxonTreeNode, bool> dico = new Dictionary <TaxonTreeNode, bool>();
foreach (Tuple <string, TaxonTreeNode> tuple in found)
{
if (dico.ContainsKey(tuple.Item2))
{
continue;
}
dico[tuple.Item2] = true;
}
result.List = dico.Keys.ToList();
return(result);
}
