public void WriteXml(XmlWriter writer)
{
// Write attributes
writer.WriteAttribute(ATTR.start, ExcludeNTermAAs);
writer.WriteAttribute(ATTR.min_length, MinPeptideLength);
writer.WriteAttribute(ATTR.max_length, MaxPeptideLength);
writer.WriteAttribute(ATTR.auto_select, AutoSelect);
// Write child elements
writer.WriteElementList(EL.peptide_exclusions, Exclusions);
}
public void WriteXml(XmlWriter writer)
{
// Write attibutes
writer.WriteAttribute(ATTR.max_variable_mods, MaxVariableMods);
writer.WriteAttribute(ATTR.max_neutral_losses, MaxNeutralLosses);
if (InternalStandardTypes.Count == 0)
{
writer.WriteAttribute(ATTR.internal_standard, IsotopeLabelType.NONE_NAME);
}
if (InternalStandardTypes.Count == 1)
{
var internalStandardType = InternalStandardTypes[0];
if (!ReferenceEquals(internalStandardType, IsotopeLabelType.heavy))
writer.WriteAttribute(ATTR.internal_standard, internalStandardType.Name);
}
else
{
foreach (var labelType in InternalStandardTypes)
{
writer.WriteStartElement(EL.internal_standard);
writer.WriteAttribute(ATTR.name, labelType.Name);
writer.WriteEndElement();
}
}
// Write child elements
if (StaticModifications.Count > 0)
writer.WriteElementList(EL.static_modifications, StaticModifications);
foreach (var heavyMods in GetHeavyModifications())
{
writer.WriteStartElement(EL.heavy_modifications);
if (!ReferenceEquals(heavyMods.LabelType, IsotopeLabelType.heavy))
writer.WriteAttribute(ATTR.isotope_label, heavyMods.LabelType);
writer.WriteElements(heavyMods.Modifications);
writer.WriteEndElement();
}
}
