public void MakeMetricsPerSwathFile(SwathGrouper.SwathMetrics swathMetrics)
{
//tsv
string swathFileName = dateTime + "_MetricsBySwath_" + fileName + ".tsv";
StreamWriter streamWriter = new StreamWriter(swathFileName);
streamWriter.Write("Filename\tswathNumber\ttargetMz\tscansPerSwath\tAvgMzRange\tSwathProportionOfTotalTIC\tswDensityAverage\tswDensityIQR\tswAvgProportionSinglyCharged\n");
for (int i = 0; i < swathMetrics.swathTargets.Count(); i++)
{
string[] swathNumber = { "swath", Convert.ToString(i + 1) };
string[] phraseToWrite = { run.SourceFileNames[0], string.Join("_", swathNumber), Convert.ToString(swathMetrics.swathTargets[i]), Convert.ToString(swathMetrics.numOfSwathPerGroup.ElementAt(i)),
Convert.ToString(swathMetrics.mzRange.ElementAt(i)), Convert.ToString(swathMetrics.SwathProportionOfTotalTIC.ElementAt(i)),
Convert.ToString(swathMetrics.swDensity50[i]), Convert.ToString(swathMetrics.swDensityIQR[i]),
Convert.ToString(swathMetrics.SwathProportionPredictedSingleChargeAvg.ElementAt(i)) };
streamWriter.Write(string.Join("\t", phraseToWrite));
streamWriter.Write("\n");
}
streamWriter.Close();
CheckColumnNumber(swathFileName, 9);
}
public FileMaker(int division, string inputFileInclPath, Run run, SwathGrouper.SwathMetrics swathMetrics, RTGrouper.RTMetrics rtMetrics, double RTDuration, double swathSizeDifference, int MS2Count, int totalMS2IonCount, int MS2Density50, int MS2DensityIQR, int MS1Count, string dateTime)
{
this.swathMetrics = swathMetrics;
this.division = division;
this.inputFileInclPath = inputFileInclPath;
this.run = run;
this.rtMetrics = rtMetrics;
this.RTDuration = RTDuration;
this.swathSizeDifference = swathSizeDifference;
this.MS2Count = MS2Count;
this.totalMS2IonCount = totalMS2IonCount;
this.MS2Density50 = MS2Density50;
this.MS2DensityIQR = MS2DensityIQR;
this.MS1Count = MS1Count;
this.dateTime = dateTime;
if (run.SourceFileNames[0].Contains("Func", System.StringComparison.CurrentCultureIgnoreCase))
{
this.fileName = run.ID;
}
else
{
this.fileName = run.SourceFileNames[0];
}
}
