public ValidJdxProcessingFixture(OsdrWebTestHarness harness)
{
FileId = harness.ProcessRecordsFile(harness.JohnId.ToString(), "2-Methyl-1-Propanol.jdx", new Dictionary <string, object>()
{
{ "parentId", harness.JohnId }
}).Result;
}
public InvalidMolProcessingFixture(OsdrWebTestHarness harness)
{
FileId = harness.ProcessRecordsFile(harness.JohnId.ToString(), "ringcount_0.mol", new Dictionary <string, object>()
{
{ "parentId", harness.JohnId }
}).Result;
}
public DeleteEntityCategoryFixture(OsdrWebTestHarness harness)
{
var categories = new List <TreeNode>()
{
new TreeNode("Category Root", new List <TreeNode>()
{
new TreeNode("My Test Category"),
new TreeNode("Projects Two")
})
};
var response = harness.JohnApi.PostData("api/categorytrees/tree", categories).Result;
var content = response.Content.ReadAsStringAsync().Result;
RootCategoryId = Guid.Parse(content);
harness.WaitWhileCategoryTreePersisted(RootCategoryId);
BlobId = harness.JohnBlobStorageClient.AddResource(harness.JohnId.ToString(), "Chemical-diagram.png", new Dictionary <string, object>()
{
{ "parentId", harness.JohnId }
}).Result;
FileId = harness.WaitWhileFileProcessed(BlobId);
}
public PredictPropertiesValidCaseFixture(OsdrWebTestHarness harness)
{
FolderId = harness.PredictProperties(harness.JohnId.ToString(), "combined lysomotrophic.sdf", new Dictionary <string, object>()
{
{ "parentId", harness.JohnId }
}).Result;
}
public InvalidCifProcessingImageGenerationFixture(OsdrWebTestHarness harness)
{
FileId = harness.ProcessRecordsFile(harness.JohnId.ToString(), "InvalidImageGeneration.cif", new Dictionary <string, object>()
{
{ "parentId", harness.JohnId }
}).Result;
}
public UploadPngFixture(OsdrWebTestHarness harness)
{
FileId = harness.ProcessFile(harness.JohnId.ToString(), "Chemical-diagram.png", new Dictionary <string, object>()
{
{ "parentId", harness.JohnId }
}).Result;
}
public UploadValidCsvFixture(OsdrWebTestHarness harness)
{
FileId = harness.ProcessFile(harness.JohnId.ToString(), "FocusSynthesis_InStock.csv", new Dictionary <string, object>()
{
{ "parentId", harness.JohnId }
}).Result;
}
public TrainOneModelAndFailDuringTheReportGenerationFixture(OsdrWebTestHarness harness)
{
FolderId = harness.TrainModel(harness.JohnId.ToString(), "drugbank_10_records.sdf", new Dictionary <string, object>()
{
{ "parentId", harness.JohnId }, { "case", "train one model and fail during the report generation" }
}).Result;
}
public AddEntityCategories(OsdrWebTestHarness harness, ITestOutputHelper output, AddEntityCategoriesFixture fixture) : base(harness, output)
{
CategoryId = fixture.CategoryId;
BlobId = fixture.BlobId;
FileId = fixture.FileId;
FileNodeId = fixture.FileNodeId;
}
public InvalidSdfProcessingFixture(OsdrWebTestHarness harness)
{
FileId = harness.ProcessRecordsFile(harness.JohnId.ToString(), "test_solubility.sdf", new Dictionary <string, object>()
{
{ "parentId", harness.JohnId }
}).Result;
}
public UploadJpgFixture(OsdrWebTestHarness harness)
{
FileId = harness.ProcessFile(harness.JohnId.ToString(), "computer-humor-computer-science.jpg", new Dictionary <string, object>()
{
{ "parentId", harness.JohnId }
}).Result;
}
public TrainOneValidModelReverseEventsFixture(OsdrWebTestHarness harness)
{
FolderId = harness.TrainModel(harness.JohnId.ToString(), "combined lysomotrophic.sdf", new Dictionary <string, object>()
{
{ "parentId", harness.JohnId }, { "case", "valid one model (reverse events order)" }
}).Result;
}
public TrainOneModelAndFailBeforeTrainingFixture(OsdrWebTestHarness harness)
{
FolderId = harness.TrainModel(harness.JohnId.ToString(), "drugbank_10_records.sdf", new Dictionary <string, object>()
{
{ "parentId", harness.JohnId }, { "case", "fail before starting training" }
}).Result;
}
public UploadValidPdfFixture(OsdrWebTestHarness harness)
{
FileId = harness.ProcessFile(harness.JohnId.ToString(), "Abdelaziz A Full_manuscript.pdf", new Dictionary <string, object>()
{
{ "parentId", harness.JohnId }
}).Result;
}
public ValidSdfProcessingFixture(OsdrWebTestHarness harness)
{
FileId = harness.ProcessRecordsFile(harness.JohnId.ToString(), "drugbank_10_records.sdf", new Dictionary <string, object>()
{
{ "parentId", harness.JohnId }
}).Result;
}
public UploadGifFixture(OsdrWebTestHarness harness)
{
FileId = harness.ProcessFile(harness.JohnId.ToString(), "2018-02-14.gif", new Dictionary <string, object>()
{
{ "parentId", harness.JohnId }
}).Result;
}
public InvalidCifProcessingFixture(OsdrWebTestHarness harness)
{
FileId = harness.ProcessRecordsFile(harness.JohnId.ToString(), "1100110_modified.cif", new Dictionary <string, object>()
{
{ "parentId", harness.JohnId }
}).Result;
}
public UploadValidDocFixture(OsdrWebTestHarness harness)
{
FileId = harness.ProcessFile(harness.JohnId.ToString(), "Developing Standard Approaches for Curating Small Molecule Pharmaceuticals_Jan18_2013.doc", new Dictionary <string, object>()
{
{ "parentId", harness.JohnId }
}).Result;
}
public InvalidJdxProcessingFixture(OsdrWebTestHarness harness)
{
FileId = harness.ProcessRecordsFile(harness.JohnId.ToString(), "13Csample.jdx", new Dictionary <string, object>()
{
{ "parentId", harness.JohnId }
}).Result;
}
public SingleStructurePredictionsFixture(OsdrWebTestHarness harness)
{
FolderId = harness.PredictProperties(harness.JohnId.ToString(), "combined lysomotrophic.sdf", new Dictionary <string, object>()
{
{ "parentId", harness.JohnId }, { "case", "valid one model with success optimization" }
}).Result;
}
public TrainOneValidModelWithSuccessOptimizationFixture(OsdrWebTestHarness harness)
{
FolderId = harness.TrainModel(harness.JohnId.ToString(), "combined lysomotrophic.sdf", new Dictionary <string, object>()
{
{ "parentId", harness.JohnId }, { "case", "valid one model with success optimization" }
}).Result;
}
public ValidCdxProcessingFixture(OsdrWebTestHarness harness)
{
FileId = harness.ProcessRecordsFile(harness.JohnId.ToString(), "125_11Mos.cdx", new Dictionary <string, object>()
{
{ "parentId", harness.JohnId }
}).Result;
}
public TrainOneValidModelWithFailedOptimization(OsdrWebTestHarness fixture, ITestOutputHelper output) : base(fixture, output)
{
FolderId = TrainModel(JohnId.ToString(), "combined lysomotrophic.sdf", new Dictionary <string, object>()
{
{ "parentId", JohnId }, { "case", "train model with failed optimization" }
}, true).Result;
}
public UploadGzFixture(OsdrWebTestHarness harness)
{
FileId = harness.ProcessFile(harness.JohnId.ToString(), "IMG_0109.gz", new Dictionary <string, object>()
{
{ "parentId", harness.JohnId }
}).Result;
}
public TrainOneValidModelWithDelays(OsdrWebTestHarness fixture, ITestOutputHelper output)
: base(fixture, output)
{
FolderId = TrainModel(JohnId.ToString(), "combined lysomotrophic.sdf", new Dictionary <string, object>()
{
{ "parentId", JohnId }, { "case", "valid one model (with delays)" }
}).Result;
}
public TrainOneModelAndFailDuringTheTraining(OsdrWebTestHarness fixture, ITestOutputHelper output)
: base(fixture, output)
{
FolderId = TrainModel(JohnId.ToString(), "drugbank_10_records.sdf", new Dictionary <string, object>()
{
{ "parentId", JohnId }, { "case", "train one model and fail during the training" }
}).Result;
}
public PredictPropertiesInvalidCase(OsdrWebTestHarness fixture, ITestOutputHelper output)
: base(fixture, output)
{
FolderId = PredictProperties("invalid case", "combined lysomotrophic.sdf", new Dictionary <string, object>()
{
{ "parentId", JohnId }
}).Result;
}
public ValidSdfProcessingFixture(OsdrWebTestHarness harness)
{
BlobId = harness.JohnBlobStorageClient.AddResource(harness.JohnId.ToString(), "drugbank_10_records.sdf", new Dictionary <string, object>()
{
{ "parentId", harness.JohnId }
}).Result;
FileId = harness.WaitWhileRecordsFileProcessed(BlobId);
}
public InvalidRxnProcessingFixture(OsdrWebTestHarness harness)
{
BlobId = harness.JohnBlobStorageClient.AddResource(harness.JohnId.ToString(), "empty.rxn", new Dictionary <string, object>()
{
{ "parentId", harness.JohnId }
}).Result;
FileId = harness.WaitWhileRecordsFileProcessed(BlobId);
}
public DeleteFolder(OsdrWebTestHarness fixture, ITestOutputHelper output) : base(fixture, output)
{
var response = JohnApi.CreateFolderEntity(JohnId, "new folder").Result;
var folderLocation = response.Headers.Location.ToString();
_folderId = Guid.Parse(folderLocation.Substring(folderLocation.LastIndexOf("/") + 1));
Harness.WaitWhileFolderCreated(_folderId);
}
