void AddAtom(PDBAtom atomData)
{
GameObject atom = new GameObject(atomData.elementType.ToString() + atomData.atomNumber, typeof(MetaballNode));
atom.transform.SetParent(root);
atom.transform.localPosition = pointCloudScale * atomData.localPosition;
atom.GetComponent <MetaballNode>().baseRadius = blobSize * MoleculeUtility.SizeForElement(atomData.elementType);
}
void EmitAtom(PDBAtom atomData)
{
ParticleSystem.EmitParams particle = new ParticleSystem.EmitParams();
particle.position = scale * atomData.localPosition;
particle.velocity = Vector3.zero;
particle.startLifetime = Mathf.Infinity;
particle.startColor = palette.ColorForElement(atomData.elementType);
particle.startSize = scale * atomSize * MoleculeUtility.SizeForElement(atomData.elementType);
particle.randomSeed = (uint)atomData.index;
emitter.Emit(particle, 1);
}
void ParseData()
{
int i = 0;
residueSequence = new List <Residue>();
lines = molecule.rawData.Split('\n');
molecule.pdbID = lines[0].Substring(62, 4);
foreach (string line in lines)
{
PDBAtom newAtom = ParseLine(i, line);
if (newAtom != null)
{
molecule.atoms.Add(newAtom);
i++;
}
}
// PrintResidueSequence();
}
public bool EqualsAtom(PDBAtom other)
{
return(chainID == other.chainID && residueNumber == other.residueNumber && residueType == other.residueType &&
atomNumber == other.atomNumber && elementType == other.elementType && localPosition == other.localPosition);
}