private static string GOTerms()
{
Go_Manual frm = new Go_Manual();
frm.ShowDialog();
string terms = frm.Terms;
if (frm.Terms == null || frm.Terms == "")
{
DialogResult dlg = MessageBox.Show("SNPs&GO cannot be run without the GO terms. Would you like to enter the GO terms?", "No Terms Entered", MessageBoxButtons.YesNo);
if (dlg == System.Windows.Forms.DialogResult.Yes)
{
GOTerms();
return(terms);
}
else
{
return(terms);
}
}
else
{
return(terms);
}
}
public static bool enterTextSNPsandGO(UVSearch main, WebBrowser webBrowserSandGo)
{
//Find GO Terms
string terms = GoTerms.GetGOs(main._RefSeq);
if (!Regex.IsMatch(terms, @"^GO:\d+(?:\sGO:\d+){0,}") && terms != "")
{
Go_Manual frm = new Go_Manual();
DialogResult dlg = frm.ShowDialog();
if (dlg == System.Windows.Forms.DialogResult.OK)
{
terms = GoTerms.GetGOs(frm.Terms);
}
}
if (terms == "")
{
terms = GOTerms();
if (terms == "" || terms == null)
{
return(false);
}
}
//save GO terms
Utilities.saveTextFile(main, "GOTerms.txt", terms);
//Comma or blank separated mutations
HtmlElementCollection collection;
collection = webBrowserSandGo.Document.GetElementsByTagName("textarea");
foreach (HtmlElement element in collection)
{
string name = element.GetAttribute("name");
if (name == "proteina")
{
element.SetAttribute("Value", main._Fasta);
}
else if (name == "posizione")
{
element.SetAttribute("Value", main._Variant);
}
else if (name == "gos")
{
element.SetAttribute("Value", terms);
}
}
return(true);
}
