private void PublicationAssertions(PubMedArticle article)
{
Assert.AreEqual("23265711", article.PubMedId);
Assert.AreEqual("1879-0852", article.Issn);
Assert.AreEqual("Electronic", article.IssnType);
Assert.AreEqual("49", article.Volume);
Assert.AreEqual("6", article.Issue);
Assert.AreEqual("2013", article.PublicationYear);
Assert.AreEqual("Apr", article.PublicationMonth);
Assert.AreEqual("European journal of cancer (Oxford, England : 1990)", article.JournalTitle);
Assert.AreEqual("Eur. J. Cancer", article.IsoAbbreviation);
Assert.IsTrue(!article.ArticleTitle.IsNullOrEmpty());
Assert.AreEqual("1161-8", article.MedlinePgn);
Assert.IsTrue(!article.Abstract.IsNullOrEmpty());
Assert.AreEqual(11, article.Authors.Count);
Assert.AreEqual(4, article.PublicationTypes.Count);
Assert.AreEqual(2012, article.PubMedPublishYear);
Assert.AreEqual(12, article.PubMedPublishMonth);
Assert.AreEqual(26, article.PubMedPublishDay);
Assert.AreEqual(2012, article.EntrezPublishYear);
Assert.AreEqual(12, article.EntrezPublishMonth);
Assert.AreEqual(26, article.EntrezPublishDay);
Assert.AreEqual(2013, article.MedlinePublishYear);
Assert.AreEqual(5, article.MedlinePublishMonth);
Assert.AreEqual(29, article.MedlinePublishDay);
Assert.AreEqual(2, article.NctNumbers.Count);
Assert.AreEqual("NCT00122460", article.NctNumbers[0]);
Assert.AreEqual("NCT00154102", article.NctNumbers[1]);
}
private PubMedArticle GetPublication(XElement pubmedArticle, string pmid)
{
var publication = new PubMedArticle();
var medlineCitation = pubmedArticle.GetElement("MedlineCitation", pmid);
publication.PubMedId = medlineCitation.GetElement("PMID", pmid).Value;
if (pmid.IsNullOrEmpty()) pmid = publication.PubMedId;
var article = medlineCitation.GetElement("Article", pmid);
var journal = article.GetElement("Journal", pmid);
var issnElement = journal.GetElement("ISSN", pmid);
var history = pubmedArticle.GetElement("PubmedData/History", pmid);
publication.Issn = issnElement.Value;
publication.IssnType = issnElement.GetAttribute("IssnType", pmid).Value;
publication.Volume = journal.GetOptionalElementValue("JournalIssue/Volume");
publication.Issue = journal.GetOptionalElementValue("JournalIssue/Issue");
publication.PublicationMonth = journal.GetOptionalElementValue("JournalIssue/PubDate/Month");
publication.PublicationYear = journal.GetOptionalElementValue("JournalIssue/PubDate/Year");
publication.JournalTitle = journal.GetOptionalElementValue("Title");
publication.IsoAbbreviation = journal.GetOptionalElementValue("ISOAbbreviation");
publication.ArticleTitle = article.GetOptionalElementValue("ArticleTitle");
publication.MedlinePgn = article.GetOptionalElementValue("Pagination/MedlinePgn");
publication.Abstract = article.GetOptionalElementValue("Abstract/AbstractText");
publication.Authors = GetAuthors(article.GetElement("AuthorList", pmid));
publication.PublicationTypes = GetPublicationTypes(article.GetElement("PublicationTypeList", pmid));
var pubMedPublishInfo = GetPubMedDate(history.GetElement("PubMedPubDate[@PubStatus='pubmed']", pmid), pmid);
publication.PubMedPublishYear = pubMedPublishInfo.Item1;
publication.PubMedPublishMonth = pubMedPublishInfo.Item2;
publication.PubMedPublishDay = pubMedPublishInfo.Item3;
var entrezPublishInfo = GetPubMedDate(history.GetElement("PubMedPubDate[@PubStatus='entrez']", pmid), pmid);
publication.EntrezPublishYear = entrezPublishInfo.Item1;
publication.EntrezPublishMonth = entrezPublishInfo.Item2;
publication.EntrezPublishDay = entrezPublishInfo.Item3;
var medlinePublishInfo = GetPubMedDate(history.GetElement("PubMedPubDate[@PubStatus='medline']", pmid), pmid);
publication.MedlinePublishYear = medlinePublishInfo.Item1;
publication.MedlinePublishMonth = medlinePublishInfo.Item2;
publication.MedlinePublishDay = medlinePublishInfo.Item3;
var accessionNumberList = article.GetOptionalElement("DataBankList/DataBank/AccessionNumberList");
if (accessionNumberList != null)
publication.NctNumbers = GetAccessionNumbers(accessionNumberList);
return publication;
}
