//dups must have the collection code
public static int updateDups(DataTable records)
{
int updates = 0;
foreach (DataRow row in records.Rows)
{
string rdespec = row["rdespec"].ToString().Trim();
string dups = row["dups"].ToString().Trim();
string barcode = row["barcode"].ToString().Trim();
string collCode = "";
if (String.IsNullOrEmpty(rdespec)) //no rdespec
{
//get the collection code
collCode = getCollCodeFromBarcode(barcode);
if (dups != collCode)
{
updates++;
row["dups"] = collCode;
}
}
else //there is rdespec
{
//deserialize it
XMLSpecimenList speclist = new XMLSpecimenList(rdespec);
string allDups = "";
bool updated = false;
foreach (XMLSpecimen spec in speclist.Specimens)
{
string code = getCollCodeFromBarcode(spec.barcode);
if (spec.ccid.Trim() != code)
{
spec.ccid = code;
updated = true;
}
allDups += code + ", ";
}
if (updated)
{
//'save' it again
row["rdespec"] = rdespecListToXML(speclist);
row["dups"] = updates;
updates++;
}
}
}
return(updates);
}
public static int updateImageList(DataTable records, List <string> imagePaths)
{
if (imagePaths == null)
{
MessageBox.Show("Image paths not available. imagelist field will not be updated.");
return(0);
}
int updateCount = 0;
//update the imagelist field to include the image paths
foreach (DataRow row in records.Rows)
{
string barcode = row["barcode"].ToString().Trim();
//this should never happen. We assume all records have barcodes.
if (string.IsNullOrEmpty(barcode))
{
continue;
}
//silent else
BarcodeParts bcParts = new BarcodeParts(row["barcode"].ToString().Trim());
string root = bcParts.collectionCode + bcParts.number;
List <string> paths = imagePaths.Where(s => s.Contains(root) && s.Contains("jpg")).ToList();
if (paths.Count > 0)
{
row["imagelist"] = String.Join(Environment.NewLine, paths);
updateCount++;
//check in rdespec
string rdespec = row["rdespec"].ToString().Trim();
if (!String.IsNullOrEmpty(rdespec))
{
XMLSpecimenList specs = new XMLSpecimenList(rdespec);
foreach (XMLSpecimen spec in specs.Specimens)
{
spec.imagelink = paths.Where(p => p.Contains(spec.barcode.Trim())).First();
}
row["rdespec"] = specs.ToXMLString();
}
}
}
return(updateCount);
}
public static string rdespecListToXML(XMLSpecimenList XMLList)
{
XmlSerializer serializer = new XmlSerializer(typeof(XMLSpecimenList));
using (var sww = new StringWriter())
{
using (XmlWriter writer = XmlWriter.Create(sww))
{
serializer.Serialize(writer, XMLList);
string xml = sww.ToString(); // Your XML
xml = xml.Replace("<SpecimenList>", "").Replace("</SpecimenList>", "").Replace("&", "&");
return(xml);
}
}
}
//add accession numbers
//also moves old accession numbers to a oldbarcode if they exist and are different
public static int addAccessionNumbers(DataTable records)
{
int updateCounter = 0;
foreach (DataRow row in records.Rows)
{
string barcode = row["barcode"].ToString().Trim();
string rdeSpec = row["rdespec"].ToString().Trim();
string accession = row["accession"].ToString().Trim();
if (barcode.Length > 0)
{
//strip off the -# at the end
char[] separators = { '-', '–', '—' };
barcode = barcode.Split(separators)[0];
//get the number part
string numberString = Regex.Match(barcode, @"\d+").Value;
if (numberString.Length > 0)
{
if (String.IsNullOrEmpty(accession)) //just put it in
{
row["accession"] = numberString;
updateCounter++;
}
else //more complicatd
{
if (accession != numberString) //its a different accession and needs to be moved to rdespec
{
if (String.IsNullOrEmpty(rdeSpec)) //no rdespec
{
XMLSpecimen spec = new XMLSpecimen();
spec.accession = numberString;
spec.barcode = barcode;
spec.oldbarcode = accession; //this is why we have to do all this
XMLSpecimenList XMLList = new XMLSpecimenList();
XMLList.Specimens = new XMLSpecimen[] { spec };
string xml = rdespecListToXML(XMLList);
//TODO check that this does not have the root element
row["rdespec"] = xml;
updateCounter++;
}
else //we already have RDEspec
{
XMLSpecimenList speclist = new XMLSpecimenList(rdeSpec);
foreach (XMLSpecimen spec in speclist.Specimens)
{
if (String.IsNullOrEmpty(spec.accession))
{
spec.accession = numberString;
spec.oldbarcode = accession;
updateCounter++;
}
else
{
if (spec.accession != numberString)
{
spec.oldbarcode = spec.accession;
spec.accession = numberString;
updateCounter++;
}
}
}
}
}
//finally update the RDE row accession field
row["accession"] = numberString;
updateCounter++;
}
}
}
}
return(updateCounter);
}
