public static DefaultAccessNumberParser GetInstance()
{
if (parser == null)
{
parser = new DefaultAccessNumberParser();
}
return parser;
}
public static DefaultAccessNumberParser GetInstance()
{
if (parser == null)
{
parser = new DefaultAccessNumberParser();
}
return(parser);
}
public string GetValue(string obj)
{
string result;
if (!parser.TryParse(obj, out result))
{
result = DefaultAccessNumberParser.GetInstance().GetValue(obj);
}
return(result);
}
private static void InitParsers()
{
ParserFormatList lstFormat = ParserFormatList.ReadFromOptionFile(SECTION_NAME);
parsers = GetParsers(lstFormat);
autoParser = parsers.Find(m => m.FormatName.Equals(AutoAccessNumberParser.FORMAT_NAME));
if (autoParser == null)
{
autoParser = DefaultAccessNumberParser.GetInstance();
}
}
public string GetValue(string name)
{
foreach (IAccessNumberParser parser in parsers)
{
string result;
if (parser.TryParse(name, out result))
{
return(result);
}
}
return(DefaultAccessNumberParser.GetInstance().GetValue(name));
}
public static List <IAccessNumberParser> GetParsers(ParserFormatList lstFormat)
{
List <IAccessNumberParser> result = new List <IAccessNumberParser>();
if (null != lstFormat && lstFormat.Count > 0)
{
List <IAccessNumberParser> parsers = lstFormat.ConvertAll(m => (IAccessNumberParser) new AccessNumberParser(m));
parsers.ForEach(p => result.Add(new NoExceptionAccessNumberParser(p)));
result.Add(new AutoAccessNumberParser(parsers));
}
else
{
result.Add(DefaultAccessNumberParser.GetInstance());
}
return(result);
}
public static IAccessNumberParser GuessParser(string databaseFileName)
{
FastaFormat ff = new FastaFormat();
using (StreamReader sr = new StreamReader(databaseFileName))
{
Sequence seq;
while ((seq = ff.ReadSequence(sr)) != null)
{
if (seq.Reference.StartsWith("IPI"))
{
return(new NoExceptionAccessNumberParser(new IPIAccessNumberParser()));
}
if (seq.Reference.StartsWith("gi|"))
{
return(new NoExceptionAccessNumberParser(new NRAccessNumberParser()));
}
}
}
return(DefaultAccessNumberParser.GetInstance());
}
public void TestGetValue()
{
Assert.AreEqual("ABCDE", DefaultAccessNumberParser.GetInstance().GetValue("ABCDE"));
Assert.AreEqual("ABCDE", DefaultAccessNumberParser.GetInstance().GetValue("ABCDE GEHDKG"));
}
