Example #1
0
        public void TestUniqueCount()
        {
            var protein  = new IdentifiedProtein();
            var spectrum = new IdentifiedSpectrum();

            var peptides = new List <IIdentifiedPeptide>();

            peptides.Add(new IdentifiedPeptide(spectrum)
            {
                Sequence = "ILLLAR"
            });

            peptides.Add(new IdentifiedPeptide(spectrum)
            {
                Sequence = "LILIAR"
            });

            Assert.AreEqual(1, IdentifiedPeptideUtils.GetUniquePeptideCount(peptides));

            peptides.Add(new IdentifiedPeptide(new IdentifiedSpectrum())
            {
                Sequence = "LIIIAR"
            });

            Assert.AreEqual(1, IdentifiedPeptideUtils.GetUniquePeptideCount(peptides));
        }
 private void DoInitUniquePeptideCount(IEnumerable <IIdentifiedPeptide> peps)
 {
     this.uniquePeptideCount = IdentifiedPeptideUtils.GetUniquePeptideCount(peps);
     this.peptideCount       = IdentifiedSpectrumUtils.GetSpectrumCount(from p in peps select p.Spectrum);
 }
 public static HashSet <string> GetUniquePeptide <T>(IEnumerable <T> spectra) where T : IIdentifiedSpectrum
 {
     return(IdentifiedPeptideUtils.GetUniquePeptides(from spec in spectra
                                                     from pep in spec.Peptides
                                                     select pep));
 }