public void TestUniqueCount()
{
var protein = new IdentifiedProtein();
var spectrum = new IdentifiedSpectrum();
var peptides = new List <IIdentifiedPeptide>();
peptides.Add(new IdentifiedPeptide(spectrum)
{
Sequence = "ILLLAR"
});
peptides.Add(new IdentifiedPeptide(spectrum)
{
Sequence = "LILIAR"
});
Assert.AreEqual(1, IdentifiedPeptideUtils.GetUniquePeptideCount(peptides));
peptides.Add(new IdentifiedPeptide(new IdentifiedSpectrum())
{
Sequence = "LIIIAR"
});
Assert.AreEqual(1, IdentifiedPeptideUtils.GetUniquePeptideCount(peptides));
}
private void DoInitUniquePeptideCount(IEnumerable <IIdentifiedPeptide> peps)
{
this.uniquePeptideCount = IdentifiedPeptideUtils.GetUniquePeptideCount(peps);
this.peptideCount = IdentifiedSpectrumUtils.GetSpectrumCount(from p in peps select p.Spectrum);
}
public static HashSet <string> GetUniquePeptide <T>(IEnumerable <T> spectra) where T : IIdentifiedSpectrum
{
return(IdentifiedPeptideUtils.GetUniquePeptides(from spec in spectra
from pep in spec.Peptides
select pep));
}