public static List <OffsetEntry> ReadFromFile(string fileName)
{
var result = new List <OffsetEntry>();
var lines = File.ReadAllLines(fileName);
for (int i = 1; i < lines.Length; i++)
{
var parts = lines[i].Split('\t');
if (parts.Length < 6)
{
break;
}
OffsetEntry entry = new OffsetEntry(int.Parse(parts[0]), double.Parse(parts[2]), double.Parse(parts[4]), int.Parse(parts[3]));
entry.InitValue.MedianInWindow = double.Parse(parts[5]);
if (parts.Length > 6)
{
entry.RefineValue.Count = int.Parse(parts[6]);
entry.RefineValue.IonOffset = int.Parse(parts[7]);
entry.RefineValue.MedianInWindow = int.Parse(parts[8]);
}
result.Add(entry);
}
return(result);
}
protected void CalculateOffset(List <OffsetEntry> offsets, Func <OffsetEntry, OffsetValue> func)
{
for (int i = 0; i < offsets.Count; i++)
{
List <OffsetEntry> window = new List <OffsetEntry>();
for (int j = i; j >= 0; j--)
{
if (offsets[i].RetentionTime - offsets[j].RetentionTime < rtWindow)
{
if (func(offsets[j]).Count > 0)
{
window.Add(offsets[j]);
}
}
else
{
break;
}
}
for (int j = i + 1; j < offsets.Count; j++)
{
if (offsets[j].RetentionTime - offsets[i].RetentionTime < rtWindow)
{
if (func(offsets[j]).Count > 0)
{
window.Add(offsets[j]);
}
}
else
{
break;
}
}
if (window.Count > 0)
{
func(offsets[i]).MedianInWindow = Statistics.Median(from w in window select func(w).IonOffset);
}
else
{
func(offsets[i]).MedianInWindow = -1;
}
}
for (int i = 0; i < offsets.Count; i++)
{
if (func(offsets[i]).MedianInWindow == -1)
{
OffsetEntry before = null;
OffsetEntry after = null;
for (int j = i - 1; j >= 0; j--)
{
if (func(offsets[j]).Count > 0)
{
before = offsets[j];
break;
}
}
for (int j = i + 1; j < offsets.Count; j++)
{
if (func(offsets[j]).Count > 0)
{
after = offsets[j];
break;
}
}
if (before == null || after == null)
{
continue;
}
func(offsets[i]).IonOffset = (func(before).IonOffset + func(after).IonOffset) / 2;
func(offsets[i]).MedianInWindow = (func(before).MedianInWindow + func(after).MedianInWindow) / 2;
}
}
}
