public void FeaturesSearch()
{
FeatureSearch.iLog = this;
FeatureSearch fs = new FeatureSearch(MSFile);
Log("Initial search");
fs.FirstSearch(Mascots);
if (RTOrder > 0)
{
Log("Outlayers Alignment - First iteration");
fs.AlignOutLayers(Mascots, RTOrder / 4, 0.5);
Log("Outlayers Alignment - Second iteration");
fs.AlignOutLayers(Mascots, RTOrder / 2, 0.25);
Log("Outlayers Alignment - Third iteration");
fs.AlignOutLayers(Mascots, RTOrder, 0.0);
}
//PrintList(Mascots);
if (QuantyAll)
{
Log("Initial search of all MS/MS spectra");
//пометить Mascots как уже отысканные
for (int j = 0; j < Mascots.Count; j++)
{
Mascots[j].AlreadySearched = true;
}
fs.FirstSearch(MSMSList);
if (RTOrder > 0)
{
Log("Outlayers Alignment of all MS/MS spectra - First iteration");
fs.AlignOutLayers(MSMSList, RTOrder / 2, 0.5);
Log("Outlayers Alignment of all MS/MS spectra - Second iteration");
fs.AlignOutLayers(MSMSList, RTOrder, 0.25);
Log("Outlayers Alignment of all MS/MS spectra - Third iteration");
fs.AlignOutLayers(MSMSList, RTOrder * 2, 0.0);
}
}
}
public void FeaturesSearch()
{
FeatureSearch.iLog = this;
FeatureSearch fs = new FeatureSearch(MSFile);
Log("Initial search");
fs.FirstSearch(Mascots);
if (RTOrder>0){
Log("Outlayers Alignment - First iteration");
fs.AlignOutLayers(Mascots,RTOrder/4,0.5);
Log("Outlayers Alignment - Second iteration");
fs.AlignOutLayers(Mascots,RTOrder/2,0.25);
Log("Outlayers Alignment - Third iteration");
fs.AlignOutLayers(Mascots,RTOrder,0.0);
}
//PrintList(Mascots);
if (QuantyAll){
Log("Initial search of all MS/MS spectra");
//пометить Mascots как уже отысканные
for (int j = 0 ; j < Mascots.Count ; j++){
Mascots[j].AlreadySearched = true;
}
fs.FirstSearch(MSMSList);
if (RTOrder>0){
Log("Outlayers Alignment of all MS/MS spectra - First iteration");
fs.AlignOutLayers(MSMSList,RTOrder/2,0.5);
Log("Outlayers Alignment of all MS/MS spectra - Second iteration");
fs.AlignOutLayers(MSMSList,RTOrder,0.25);
Log("Outlayers Alignment of all MS/MS spectra - Third iteration");
fs.AlignOutLayers(MSMSList,RTOrder*2,0.0);
}
}
}
