public void ClearListsTablesFigures(bool clear_following_forms)
{
Sweet.lollipop.raw_experimental_components.Clear();
Sweet.lollipop.raw_quantification_components.Clear();
foreach (InputFile f in Sweet.lollipop.input_files)
{
f.reader.Clear();
}
if (clear_following_forms)
{
ProteoformSweet parMDI = ((MainWindow)MDIHelpers.getParentWindow(this)).MDIParentControl;
for (int i = parMDI.forms.IndexOf(this) + 1; i < (parMDI).forms.Count; i++)
{
ISweetForm sweet = (parMDI).forms[i];
if (sweet as TopDown == null)
{
sweet.ClearListsTablesFigures(false);
}
}
}
dgv_fileList.Rows.Clear();
dgv_rawComponents.Rows.Clear();
dgv_chargeStates.Rows.Clear();
dgv_fileList.DataSource = null;
dgv_rawComponents.DataSource = null;
dgv_chargeStates.DataSource = null;
}
public void FillTablesAndCharts()
{
DisplayUtility.FillDataGridView(dgv_fileList, Sweet.lollipop.get_files(Sweet.lollipop.input_files, new Purpose[] { Purpose.Identification, Purpose.Quantification }).Select(c => new DisplayInputFile(c)));
DisplayInputFile.FormatInputFileTable(dgv_fileList, new Purpose[] { Purpose.Identification, Purpose.Quantification });
dgv_fileList.ReadOnly = true;
if ((bool)rb_displayIdentificationComponents.IsChecked && Sweet.lollipop.raw_experimental_components.Count > 0)
{
DisplayUtility.FillDataGridView(dgv_rawComponents, Sweet.lollipop.raw_experimental_components.Select(c => new DisplayComponent(c)));
}
if ((bool)rb_displayQuantificationComponents.IsChecked && Sweet.lollipop.raw_quantification_components.Count > 0)
{
DisplayUtility.FillDataGridView(dgv_rawComponents, Sweet.lollipop.raw_quantification_components.Select(c => new DisplayComponent(c)));
}
DisplayComponent.FormatComponentsTable(dgv_rawComponents);
rtb_raw_components_counts.Text = ResultsSummaryGenerator.raw_components_report();
ProteoformSweet parMDI = ((MainWindow)MDIHelpers.getParentWindow(this)).MDIParentControl;
NeuCodePairs pairs_form = parMDI.neuCodePairs;
if (Sweet.lollipop.neucode_labeled && pairs_form.ReadyToRunTheGamut())
{
pairs_form.RunTheGamut(false);
}
}
private void bt_stepthru_Click(object sender, RoutedEventArgs e)
{
ProteoformSweet parMDI = ((MainWindow)MDIHelpers.getParentWindow(this)).MDIParentControl; //get the parent control of the form;
///parMDI.resultsToolStripMenuItem.ShowDropDown();
MessageBox.Show("Use the Results menu to step through processing results.\n\n" +
"Load results and databases in this panel, and then proceed to Raw Experimental Components.", "Step Through Introduction.");
}
private void btn_fullRun_Click(object sender, RoutedEventArgs e)
{
ProteoformSweet parMDI = ((MainWindow)MDIHelpers.getParentWindow(this)).MDIParentControl; //get the parent control of the form;
///Stopwatch successful_run = parMDI.full_run();
///if (successful_run != null) MessageBox.Show("Successfully ran method in "
/// + String.Format("{0:00}:{1:00}:{2:00}.{3:00}", successful_run.Elapsed.Hours, successful_run.Elapsed.Minutes, successful_run.Elapsed.Seconds, successful_run.Elapsed.Milliseconds / 10)
/// + ". Feel free to explore using the Results menu.", "Full Run");
///else MessageBox.Show("Method did not successfully run.", "Full Run");
}
public void InitializeParameterSet()
{
//tb_resultsFolder.Text = Sweet.lollipop.results_folder;
rb_neucode.IsChecked = Sweet.lollipop.neucode_labeled;
rb_unlabeled.IsChecked = !rb_neucode.IsChecked;
cb_calibrate_td_files.IsChecked = Sweet.lollipop.calibrate_td_files;
cb_calibrate_raw_files.IsChecked = Sweet.lollipop.calibrate_raw_files;
ProteoformSweet parMDI = ((MainWindow)MDIHelpers.getParentWindow(this)).MDIParentControl; //get the parent control of the form;
///parMDI.enable_neuCodeProteoformPairsToolStripMenuItem(Sweet.lollipop.neucode_labeled);
///parMDI.enable_quantificationToolStripMenuItem(Sweet.lollipop.input_files.Any(f => f.purpose == Purpose.Quantification));
///parMDI.enable_topDownToolStripMenuItem(Sweet.lollipop.input_files.Any(f => f.purpose == Purpose.TopDown));
}
private void exportAllTablesToolStripMenuItem_Click(object sender, RoutedEventArgs e)
{
ProteoformSuiteGUI.ExcelWriter writer = new ProteoformSuiteGUI.ExcelWriter();
if (MessageBox.Show("Will prepare for export. This may take a while.", "Export Data", MessageBoxButton.OKCancel) == MessageBoxResult.Cancel)
{
return;
}
Parallel.ForEach(forms, form => form.SetTables());
writer.BuildHyperlinkSheet(forms.Select(sweet => new Tuple <string, List <DataTable> >((sweet as Window).Name, sweet.DataTables)).ToList());
Parallel.ForEach(forms, form => writer.ExportToExcel(form.DataTables, (form as Window).Name));
if (MessageBox.Show("Finished preparing. Ready to save? This may take a while.", "Export Data", MessageBoxButton.OKCancel) == MessageBoxResult.Cancel)
{
return;
}
SaveExcelFile(writer, MDIHelpers.getParentWindow(current_form as UserControl).Name + "_table.xlsx"); //get the window hosting tabcontrol, which hosts usercontrol
}
public void ClearListsTablesFigures(bool clear_following)
{
Sweet.lollipop.input_files.Clear();
Sweet.save_actions.Clear();
Sweet.loaded_actions.Clear();
Sweet.lollipop.results_folder = "";
//tb_resultsFolder.Text = "";
ProteoformSweet parMDI = ((MainWindow)MDIHelpers.getParentWindow(this)).MDIParentControl; //get the parent control of the form;
if (clear_following)
{
for (int i = parMDI.forms.IndexOf(this) + 1; i < parMDI.forms.Count; i++)
{
ISweetForm sweet = parMDI.forms[i];
sweet.ClearListsTablesFigures(false);
sweet.FillTablesAndCharts();
}
}
FillTablesAndCharts();
}
public void RunTheGamut(bool full_run)
{
ClearListsTablesFigures(true);
Sweet.lollipop.getConditionBiorepFractionLabels(Sweet.lollipop.neucode_labeled, Sweet.lollipop.input_files); //examines the conditions and bioreps to determine the maximum number of observations to require for quantification
ProteoformSweet parMDI = ((MainWindow)MDIHelpers.getParentWindow(this)).MDIParentControl;
parMDI.quantification.InitializeConditionsParameters();
parMDI.aggregatedProteoforms.InitializeParameterSet();
Parallel.Invoke
(
() => Sweet.lollipop.process_raw_components(Sweet.lollipop.input_files, Sweet.lollipop.raw_experimental_components, Purpose.Identification, true),
() => Sweet.lollipop.process_raw_components(Sweet.lollipop.input_files, Sweet.lollipop.raw_quantification_components, Purpose.Quantification, true)
);
if (ComponentReader.components_with_errors.Count > 0)
{
MessageBox.Show("Error in Deconvolution Results File: " + string.Join(", ", ComponentReader.components_with_errors));
ClearListsTablesFigures(true);
return;
}
FillTablesAndCharts();
}