/// <summary>
/// Assemble function.
/// </summary>
/// <param name="args">Arguments to Assemble.</param>
private static void Assemble(string[] args)
{
AssembleArguments options = new AssembleArguments();
CommandLineArguments parser = new CommandLineArguments();
AddAssembleParameters(parser);
if (args.Length > 0)
{
try
{
parser.Parse(args, options);
}
catch (ArgumentParserException ex)
{
DisplayErrorMessage(ex.Message);
DisplayErrorMessage(Resources.AssembleHelp);
Environment.Exit(-1);
}
if (options.Help)
{
DisplayErrorMessage(Resources.AssembleHelp);
}
else
{
options.AssembleSequences();
}
}
else
{
DisplayErrorMessage(Resources.AssembleHelp);
}
}
/// <summary>
/// Assemble function.
/// </summary>
/// <param name="args">Arguments to Assemble.</param>
private static void Assemble(string[] args)
{
AssembleArguments options = new AssembleArguments();
CommandLineArguments parser = new CommandLineArguments();
AddAssembleParameters(parser);
if (args.Length > 0)
{
try
{
parser.Parse(args, options);
}
catch (ArgumentParserException ex)
{
Output.WriteLine(OutputLevel.Error, ex.Message);
Output.WriteLine(OutputLevel.Required, Resources.AssembleHelp);
Environment.Exit(-1);
}
if (options.Help)
{
Output.WriteLine(OutputLevel.Required, Resources.AssembleHelp);
}
else
{
ValidateKmerLength(options.KmerLength, options.AllowKmerLengthEstimation);
if (options.Verbose)
{
Output.TraceLevel = OutputLevel.Information | OutputLevel.Verbose;
}
else if (!options.Quiet)
{
Output.TraceLevel = OutputLevel.Information;
}
options.AssembleSequences();
}
}
else
{
Output.WriteLine(OutputLevel.Required, Resources.AssembleHelp);
}
}
/// <summary>
/// Assemble function.
/// </summary>
/// <param name="args">Arguments to Assemble.</param>
private static void Assemble(string[] args)
{
AssembleArguments options = new AssembleArguments();
if (args.Length > 0 && Parser.ParseArguments(args, options))
{
if (options.Help)
{
DisplayErrorMessage(Resources.AssembleHelp);
}
else
{
options.AssembleSequences();
}
}
else
{
DisplayErrorMessage(Resources.AssembleHelp);
}
}
/// <summary>
/// Assemble function.
/// </summary>
/// <param name="args">Arguments to Assemble.</param>
private static void Assemble(string[] args)
{
AssembleArguments options = new AssembleArguments();
CommandLineArguments parser = new CommandLineArguments();
AddAssembleParameters(parser);
if (args.Length > 0)
{
try
{
parser.Parse(args, options);
}
catch (ArgumentParserException ex)
{
Output.WriteLine(OutputLevel.Error, ex.Message);
Output.WriteLine(OutputLevel.Required, Resources.AssembleHelp);
Environment.Exit(-1);
}
if (options.Help)
{
Output.WriteLine(OutputLevel.Required, Resources.AssembleHelp);
}
else
{
ValidateKmerLength(options.KmerLength, options.AllowKmerLengthEstimation);
if (options.Verbose)
Output.TraceLevel = OutputLevel.Information | OutputLevel.Verbose;
else if (!options.Quiet)
Output.TraceLevel = OutputLevel.Information;
options.AssembleSequences();
}
}
else
{
Output.WriteLine(OutputLevel.Required, Resources.AssembleHelp);
}
}