private void RebuildPeptideList()
{
_pepIdCounter = 0;
_peptides.Clear();
foreach (var sil in IdentData.DataCollection.AnalysisData.SpectrumIdentificationList)
{
foreach (var sir in sil.SpectrumIdentificationResults)
{
foreach (var sii in sir.SpectrumIdentificationItems)
{
if (_peptides.Any(item => item.Equals(sii.Peptide)))
{
continue;
}
sii.Peptide.Id = "Pep_" + _pepIdCounter;
_pepIdCounter++;
_peptides.Add(sii.Peptide);
}
}
}
foreach (var pepEv in _peptideEvidences)
{
if (_peptides.Any(item => item.Equals(pepEv.Peptide)))
{
continue;
}
pepEv.Peptide.Id = "Pep_" + _pepIdCounter;
_pepIdCounter++;
_peptides.Add(pepEv.Peptide);
}
}
private void RebuildSearchDatabaseList()
{
_searchDbIdCounter = 0;
_searchDatabases.Clear();
foreach (var dbSeq in IdentData.SequenceCollection.DBSequences)
{
if (_searchDatabases.Any(item => item.Equals(dbSeq.SearchDatabase)))
{
continue;
}
dbSeq.SearchDatabase.Id = "SearchDB_" + _searchDbIdCounter;
_searchDbIdCounter++;
_searchDatabases.Add(dbSeq.SearchDatabase);
}
foreach (var specId in IdentData.AnalysisCollection.SpectrumIdentifications)
{
foreach (var dbSeq in specId.SearchDatabases)
{
if (_searchDatabases.Any(item => item.Equals(dbSeq.SearchDatabase)))
{
continue;
}
dbSeq.SearchDatabase.Id = "SearchDB_" + _searchDbIdCounter;
_searchDbIdCounter++;
_searchDatabases.Add(dbSeq.SearchDatabase);
}
}
}
private void RebuildSpectraDataList()
{
_specDataIdCounter = 0;
_spectraDataList.Clear();
foreach (var sil in IdentData.DataCollection.AnalysisData.SpectrumIdentificationList)
{
foreach (var spectraData in sil.SpectrumIdentificationResults)
{
if (_spectraDataList.Any(item => item.Equals(spectraData.SpectraData)))
{
continue;
}
spectraData.SpectraData.Id = "SID_" + _specDataIdCounter;
_specDataIdCounter++;
_spectraDataList.Add(spectraData.SpectraData);
}
}
foreach (var specId in IdentData.AnalysisCollection.SpectrumIdentifications)
{
foreach (var spectraData in specId.InputSpectra)
{
if (_spectraDataList.Any(item => item.Equals(spectraData.SpectraData)))
{
continue;
}
spectraData.SpectraData.Id = "SID_" + _specDataIdCounter;
_specDataIdCounter++;
_spectraDataList.Add(spectraData.SpectraData);
}
}
}
private void RebuildDbSequenceList()
{
_dBSeqIdCounter = 0;
_dBSequences.Clear();
foreach (var pepEv in _peptideEvidences)
{
if (_dBSequences.Any(item => item.Equals(pepEv.DBSequence)))
{
continue;
}
pepEv.DBSequence.Id = "DBSeq_" + _dBSeqIdCounter;
_dBSeqIdCounter++;
_dBSequences.Add(pepEv.DBSequence);
}
}
internal void RebuildSIPList()
{
_idCounter = 0;
_spectrumIdentificationProtocols.Clear();
foreach (var specId in IdentData.AnalysisCollection.SpectrumIdentifications)
{
if (_spectrumIdentificationProtocols.Any(item => item.Equals(specId.SpectrumIdentificationProtocol)))
{
continue;
}
specId.SpectrumIdentificationProtocol.Id = "SpecIdentProtocol_" + _idCounter;
_idCounter++;
_spectrumIdentificationProtocols.Add(specId.SpectrumIdentificationProtocol);
}
}