private void updateSettingsFor(IndividualSettingsDTO individualSettingsDTO, Species species, SpeciesPopulation speciesPopulation)
{
individualSettingsDTO.Species = species;
individualSettingsDTO.SpeciesPopulation = speciesPopulation;
individualSettingsDTO.Gender = DefaultGenderFor(speciesPopulation);
individualSettingsDTO.CalculationMethods = individualCalculationMethods(species);
}
private IndividualSettingsDTO defaultSettingsFor(Species species, SpeciesPopulation speciesPopulation)
{
var individualSettingsDTO = new IndividualSettingsDTO();
updateSettingsFor(individualSettingsDTO, species, speciesPopulation);
RetrieveDefaultValueFor(individualSettingsDTO);
return(individualSettingsDTO);
}
public void UpdateDiseaseStateFor(IndividualSettingsDTO individualSettingsDTO)
{
var diseaseState = individualSettingsDTO.DiseaseState;
//We clone parameters to ensure that we are not updating the default from DB;
individualSettingsDTO.DiseaseStateParameter = diseaseState.Parameters
.Select(_cloner.Clone)
.Select(_parameterMapper.MapAsReadWriteFrom)
.FirstOrDefault() ?? new NullParameterDTO();
}
public IndividualSettingsDTO DefaultSettingForSpecies(Species species)
{
var individualSettingsDTO = new IndividualSettingsDTO {
Species = species
};
UpdateSettingsAfterSpeciesChange(individualSettingsDTO);
RetrieveDefaultValueFor(individualSettingsDTO);
return(individualSettingsDTO);
}
private void setDefaultValues(IndividualSettingsDTO individualSettingsDTO, OriginData originData, IParameterDTO parameterAgeDTO, IParameterDTO parameterGestationalAge)
{
var parameterWeight = _individualModelTask.MeanWeightFor(originData);
var parameterHeight = _individualModelTask.MeanHeightFor(originData);
var parameterBMI = _individualModelTask.BMIBasedOn(originData, parameterWeight, parameterHeight);
individualSettingsDTO.SetDefaultParameters(parameterAgeDTO,
_parameterMapper.MapAsReadWriteFrom(parameterHeight),
_parameterMapper.MapAsReadWriteFrom(parameterWeight),
_parameterMapper.MapAsReadWriteFrom(parameterBMI),
parameterGestationalAge);
}
public void RetrieveDefaultValueFor(IndividualSettingsDTO individualSettingsDTO)
{
individualSettingsDTO.SubPopulation = _subPopulationDTOMapper.MapFrom(_originDataTask.DefaultSubPopulationFor(individualSettingsDTO.Species));
//Default parameter such as age etc.. were not defined yet
var originData = _originDataMapper.MapFrom(individualSettingsDTO);
var parameterAge = _parameterMapper.MapAsReadWriteFrom(_individualModelTask.MeanAgeFor(originData));
originData.Age = parameterAge.KernelValue;
var parameterGestationalAge = _parameterMapper.MapAsReadWriteFrom(_individualModelTask.MeanGestationalAgeFor(originData));
originData.GestationalAge = parameterGestationalAge.KernelValue;
setDefaultValues(individualSettingsDTO, originData, parameterAge, parameterGestationalAge);
}
public void UpdateSettingsAfterSpeciesChange(IndividualSettingsDTO individualSettingsDTO)
{
var species = individualSettingsDTO.Species;
var population = _populationRepository.DefaultPopulationFor(species);
individualSettingsDTO.Species = species;
individualSettingsDTO.Population = population;
individualSettingsDTO.Gender = population.DefaultGender;
individualSettingsDTO.CalculationMethods = individualCalculationMethods(species);
//after species change, we are always in healthy state
individualSettingsDTO.DiseaseState = _diseaseStateRepository.HealthyState;
UpdateDiseaseStateFor(individualSettingsDTO);
}
public void UpdateDefaultValueFor(IndividualSettingsDTO individualSettingsDTO)
{
individualSettingsDTO.SubPopulation = _subPopulationDTOMapper.MapFrom(_originDataTask.DefaultSubPopulationFor(individualSettingsDTO.Species));
//Default parameter such as age etc.. were not defined yet
var originData = _originDataMapper.MapFrom(individualSettingsDTO);
var parameterAge = _individualModelTask.MeanAgeFor(originData);
if (parameterAge != null)
{
originData.Age = new OriginDataParameter(parameterAge.Value);
}
var parameterGestationalAge = _individualModelTask.MeanGestationalAgeFor(originData);
if (parameterGestationalAge != null)
{
originData.GestationalAge = new OriginDataParameter(parameterGestationalAge.Value);
}
setDefaultValues(individualSettingsDTO, originData, _parameterMapper.MapAsReadWriteFrom(parameterAge), _parameterMapper.MapAsReadWriteFrom(parameterGestationalAge));
}
public void RetrieveMeanValueFor(IndividualSettingsDTO individualSettingsDTO)
{
OriginData originData = _originDataMapper.MapFrom(individualSettingsDTO);
setDefaultValues(individualSettingsDTO, originData, individualSettingsDTO.ParameterAge, individualSettingsDTO.ParameterGestationalAge);
}
public void UpdateSettingsAfterSpeciesChange(IndividualSettingsDTO individualSettingsDTO)
{
updateSettingsFor(individualSettingsDTO, individualSettingsDTO.Species, DefaultPopulationFor(individualSettingsDTO.Species));
}
public void UpdateSettingsAfterSpeciesChange(IndividualSettingsDTO individualSettingsDTO)
{
individualSettingsDTO.SpeciesPopulation = DefaultPopulationFor(individualSettingsDTO.Species);
individualSettingsDTO.Gender = DefaultGenderFor(individualSettingsDTO.SpeciesPopulation);
individualSettingsDTO.CalculationMethods = individualCalculationMethods(individualSettingsDTO.Species);
}
