|
public InsertResult ( |
||
| result | ||
| return | System.Threading.Tasks.Task | |
public async static void AnalysisDBTest()
{
var snapshot1 = new ArrivalTimeSnapShot();
snapshot1.DriftTubeVoltageInVolt = 1000;
snapshot1.MeasuredArrivalTimeInMs = 22;
snapshot1.PressureInTorr = 4;
snapshot1.TemperatureInKelvin = 10;
var iso1 = new IdentifiedIsomerInfo(2 ,222, 0.9, 10.5, 115, 123, new List<ArrivalTimeSnapShot>(){snapshot1}, 100, AnalysisStatus.Positive, new PeakScores(1.0, 0.8, 0.7), new MolecularTarget("C2H4O16P2", IonizationMethod.Protonated, "testamin"), 0.1, 0);
var idens = new List<IdentifiedIsomerInfo>() {iso1};
PeakScores scores = new PeakScores(0, 0.5, 1);
CrossSectionWorkflowResult result1 = new CrossSectionWorkflowResult("ABC_Dataset_01", new MolecularTarget("C2H4O16P2", IonizationMethod.Protonated, "testamin"), AnalysisStatus.Positive, new AssociationHypothesisInfo(0.1, 0.2), scores, 0.5, OutputFileDir, "123");
CrossSectionWorkflowResult result2 = new CrossSectionWorkflowResult("ABC_Dataset_02", new MolecularTarget("C2H4O16P2", IonizationMethod.Protonated, "testamin"), AnalysisStatus.Positive, new AssociationHypothesisInfo(0.1, 0.4), scores, 0.8, OutputFileDir, "123");
CrossSectionWorkflowResult result3 = new CrossSectionWorkflowResult("ABC_Dataset_03", new MolecularTarget("C2H4O16P2", IonizationMethod.Deprotonated, "testamin"), AnalysisStatus.Positive, new AssociationHypothesisInfo(0.1, 0.4), idens, scores, 0.8, OutputFileDir, "123");
CrossSectionWorkflowResult result4 = new CrossSectionWorkflowResult("ABC_Dataset_03", new MolecularTarget("C2H4O16P2", IonizationMethod.Sodiumated, "testamin"), AnalysisStatus.Positive, new AssociationHypothesisInfo(0.1, 0.4), idens, scores, 0.8, OutputFileDir, "123");
CrossSectionWorkflowResult result5 = new CrossSectionWorkflowResult("ABC_Dataset_03", new MolecularTarget("C10H40", IonizationMethod.Protonated, "googlin"), AnalysisStatus.Positive, new AssociationHypothesisInfo(0.1, 0.4), idens, scores, 0.8, OutputFileDir, "123");
CrossSectionWorkflowResult result6 = new CrossSectionWorkflowResult("ABC_Dataset_03", new MolecularTarget("C10H40", IonizationMethod.Protonated, "googlin"), AnalysisStatus.Negative, null, idens, scores, 0.8, OutputFileDir, "123");
string fileName = @"output\test.sqlite";
AnalysisLibrary lib = new AnalysisLibrary(fileName);
await lib.CreateTables();
await lib.InsertResult(result1);
await lib.InsertResult(result2);
await lib.InsertResult(result3);
await lib.InsertResult(result4);
await lib.InsertResult(result5);
await lib.InsertResult(result6);
}
/// <summary>
/// process result files collected and generate the CCS/mz DB.
/// </summary>
/// <param name="analysisDirectory">
/// The analysis directory.
/// </param>
/// <exception cref="Exception">
/// </exception>
public void ProcessResultFiles(string analysisDirectory, AnalysisLibrary lib)
{
long count = 0;
long totalTasks = this.Tasks.Count();
foreach (ImsInformedProcess task in this.Tasks)
{
// Deserialize the results and dispatch them into lookup tables.
try
{
IList<CrossSectionWorkflowResult> results = task.DeserializeResultBinFile();
AsyncHelpers.RunSync(() => lib.InsertResult(results));
count++;
Console.WriteLine("Number of results processed: {0}/{1}", count, totalTasks);
Console.SetCursorPosition(0, Console.CursorTop - 1);
// Dispose the task as it is no longer used.
task.Dispose();
}
catch (Exception e)
{
Console.WriteLine("Result processing for {0} failed", task.DataSetName);
Console.WriteLine("Exception: {0}", e.Message);
Console.WriteLine(string.Empty);
}
}
this.empty = false;
}
