Example #1
0
        public void TestGetEuclideanDistance()
        {
            var sp      = CDK.SmilesParser;
            var target  = sp.ParseSmiles("C\\C=C/Nc1cccc(c1)N(O)\\C=C\\C\\C=C\\C=C/C");
            var queryac = sp.ParseSmiles("Nc1ccccc1");

            var smsd1 = new Isomorphism(Algorithm.SubStructure, true);

            smsd1.Init(queryac, target, true, true);
            smsd1.SetChemFilters(true, true, true);

            double score = 3.605;

            Assert.AreEqual(score, smsd1.GetEuclideanDistance(), 0.005);

            Isomorphism smsd2 = new Isomorphism(Algorithm.VFLibMCS, true);

            smsd2.Init(queryac, target, true, true);
            smsd2.SetChemFilters(true, true, true);

            Assert.AreEqual(score, smsd2.GetEuclideanDistance(), 0.005);
        }