public BafFileReader(string bafFilePath)
{
if (string.IsNullOrWhiteSpace(bafFilePath))
{
throw new ArgumentNullException("bafFilePath");
}
if (!File.Exists(bafFilePath))
{
throw new FileNotFoundException("Baf file not exists.");
}
this.bafFilePath = bafFilePath;
try
{
sqlFilePath = Baf2SqlWrapper.GetSQLiteCacheFilename(bafFilePath);
// First argument = 1, ignore contents of Calibrator.ami (if it exists)
baf2SqlHandle = Baf2SqlWrapper.baf2sql_array_open_storage(1, bafFilePath);
if (baf2SqlHandle == 0)
{
Baf2SqlWrapper.ThrowLastBaf2SqlError();
}
linq2BafSql = new Linq2BafSql(sqlFilePath);
model = MzLiteJson.HandleExternalModelFile(this, GetModelFilePath());
supportedVariables = SupportedVariablesCollection.ReadSupportedVariables(linq2BafSql);
}
catch (Exception ex)
{
throw new MzLiteIOException(ex.Message, ex);
}
}
public static SpectrumVariableCollection ReadSpectrumVariables(Linq2BafSql linq2BafSql, UInt64?spectrumId)
{
IEnumerable <BafSqlPerSpectrumVariable> variables = linq2BafSql.GetPerSpectrumVariables(linq2BafSql.Core, spectrumId);
var col = new SpectrumVariableCollection();
foreach (var v in variables)
{
col.Add(v);
}
return(col);
}
public static SupportedVariablesCollection ReadSupportedVariables(Linq2BafSql linq2BafSql)
{
var variables = linq2BafSql
.SupportedVariables
.ToArray()
.Where(x => x.Variable.HasValue && string.IsNullOrWhiteSpace(x.PermanentName) == false);
var col = new SupportedVariablesCollection();
foreach (var item in variables)
{
col.Add(item);
}
return(col);
}
