public void CreateNewWindow(classAlignmentData alignment)
{
AlignmentView window = new AlignmentView()
{
DataContext = new AlignmentViewModel(alignment)
};
window.Show();
}
/// <summary>
/// Arguments that hold alignment information when a dataset is aligned.
/// </summary>
public FeaturesAlignedEventArgs(DatasetInformation datasetInfo,
IEnumerable<UMCLight> baselineFeatures,
IEnumerable<UMCLight> aligneeFeatures,
classAlignmentData alignmentData)
{
m_datasetInformation = datasetInfo;
BaselineFeatures = baselineFeatures;
AligneeFeatures = aligneeFeatures;
AlignmentData = alignmentData;
}
public AlignmentViewModel(classAlignmentData alignment)
{
this.WindowTitle = String.Format("{0} Alignment Data",alignment.aligneeDataset);
var residuals = alignment.ResidualData;
var heatmap = HeatmapFactory.CreateAlignedHeatmap(alignment.heatScores);
var netResidual = ScatterPlotFactory.CreateResidualPlot(residuals.Scan, residuals.LinearCustomNet,
residuals.LinearNet, "NET Residuals", "Scans", "NET");
var massHistogram = HistogramFactory.CreateHistogram(alignment.netErrorHistogram, "Mass Error", "Mass Error (ppm)");
var netHistogram = HistogramFactory.CreateHistogram(alignment.netErrorHistogram, "NET Error", "NET Error");
var massMzResidual = ScatterPlotFactory.CreateResidualPlot(residuals.Mz, residuals.MzMassError,
residuals.MzMassErrorCorrected, "Mass Residuals", "m/z", "Mass Errors");
var massScanResidual = ScatterPlotFactory.CreateResidualPlot(residuals.Scan, residuals.MzMassError,
residuals.MzMassErrorCorrected, "Mass Residuals", "Scan", "Mass Errors");
this.HeatmapImage = ImageConverter.ConvertImage(PlotImageUtility.CreateImage(heatmap));
this.NetScanImage = ImageConverter.ConvertImage(PlotImageUtility.CreateImage(netResidual));
this.MassHistogram = ImageConverter.ConvertImage(PlotImageUtility.CreateImage(massHistogram));
this.NetHistogram = ImageConverter.ConvertImage(PlotImageUtility.CreateImage(netHistogram));
this.MassMzImage = ImageConverter.ConvertImage(PlotImageUtility.CreateImage(massMzResidual));
this.MassScanImage = ImageConverter.ConvertImage(PlotImageUtility.CreateImage(massScanResidual));
}
private void ExportAlignmentData(classAlignmentData data,
DatasetInformation baselineDatasetInformation,
DatasetInformation alignDatasetInformation,
IEnumerable<UMCLight> baselineFeatures,
IEnumerable<UMCLight> aligneeFeatures)
{
var netValues = new List<double>();
var massValues = new List<double>();
var anchorPoints = data.Matches;
foreach (var match in anchorPoints)
{
netValues.Add(match.AnchorPointX.Net - match.AnchorPointY.Net);
massValues.Add(match.AnchorPointX.Mass - match.AnchorPointY.Mass);
}
var netHist =
MatchCountHistogramBuilder.CreateResidualHistogram(-.05, .05, .01, netValues);
var netHistogram = new Dictionary<double, int>();
Console.WriteLine();
for (var i = 0; i < netHist.Bins.Count; i++)
{
netHistogram.Add(netHist.Bins[i], Convert.ToInt32(netHist.Data[i]));
Console.WriteLine("{0}\t{1}", netHist.Bins[i], netHist.Data[i]);
}
}