public UMCTreeViewModel(UMCLight feature, UMCCollectionTreeViewModel parent)
{
m_feature = feature;
m_parent = parent;
var information = SingletonDataProviders.GetDatasetInformation(m_feature.GroupId);
if (information != null)
{
Name = information.DatasetName;
}
else
{
Name = string.Format("Dataset {0}", m_feature.GroupId);
}
AddStatistic("Id", m_feature.Id);
AddStatistic("Dataset Id", m_feature.GroupId);
AddStatistic("Mass", m_feature.MassMonoisotopicAligned, "N2");
AddStatistic("NET", m_feature.Net, "N2");
if (m_feature.DriftTime > 0)
{
AddStatistic("Drift Time", m_feature.DriftTime, "N2");
}
AddStatistic("Charge", m_feature.ChargeState);
}
public UMCTreeViewModel(UMCLight feature, UMCCollectionTreeViewModel parent)
{
m_feature = feature;
m_parent = parent;
var information = SingletonDataProviders.GetDatasetInformation(m_feature.GroupId);
if (information != null)
{
Name = information.DatasetName;
}
else
{
Name = string.Format("Dataset {0}", m_feature.GroupId);
}
AddStatistic("Id", m_feature.Id);
AddStatistic("Dataset Id", m_feature.GroupId);
AddStatistic("Mass", m_feature.MassMonoisotopicAligned, "N2");
AddStatistic("NET", m_feature.Net, "N2");
if (m_feature.DriftTime > 0)
{
AddStatistic("Drift Time", m_feature.DriftTime, "N2");
}
AddStatistic("Charge", m_feature.ChargeState);
}
public UMCClusterTreeViewModel(UMCClusterLightMatched matchedCluster, TreeItemViewModel parent)
{
m_items = new ObservableCollection<TreeItemViewModel>();
m_parent = parent;
m_cluster = matchedCluster;
var features = new UMCCollectionTreeViewModel(matchedCluster.Cluster);
features.FeatureSelected += feature_FeatureSelected;
features.Name = "Features";
// Cluster level statistics
var cluster = matchedCluster.Cluster;
AddStatistics("Mass", cluster.MassMonoisotopic);
var item = new StringTreeViewItem(
cluster.Net.ToString("F3",
CultureInfo.InvariantCulture),
"NET");
m_items.Add(item);
if (cluster.DriftTime > 0)
{
AddStatistics("Drift Time", cluster.DriftTime);
}
AddStatistics("Datasets", cluster.DatasetMemberCount);
AddStatistics("Total", cluster.MemberCount);
AddStatistics("Total MS/MS", cluster.MsMsCount);
AddStatistics("Total Identifications", cluster.IdentifiedSpectraCount);
var allIdentifications = new GenericCollectionTreeViewModel();
allIdentifications.Name = "Identifications";
// Items to display the base childen.
var identifications = new PeptideCollectionTreeViewModel(cluster);
identifications.Name = "Search Results";
identifications.FeatureSelected += feature_FeatureSelected;
var spectra = new MsMsCollectionTreeViewModel(cluster);
spectra.Name = "MS/MS";
m_spectra = spectra;
spectra.SpectrumSelected += spectra_SpectrumSelected;
spectra.FeatureSelected += feature_FeatureSelected;
var matches = new MassTagCollectionMatchTreeViewModel(matchedCluster.ClusterMatches);
matches.Name = "AMT Tags";
allIdentifications.Items.Add(identifications);
allIdentifications.Items.Add(spectra);
allIdentifications.Items.Add(matches);
m_allIdentifications = allIdentifications;
m_items.Add(features);
m_items.Add(allIdentifications);
}
public UMCClusterTreeViewModel(UMCClusterLightMatched matchedCluster, TreeItemViewModel parent)
{
m_items = new ObservableCollection <TreeItemViewModel>();
m_parent = parent;
m_cluster = matchedCluster;
var features = new UMCCollectionTreeViewModel(matchedCluster.Cluster);
features.FeatureSelected += feature_FeatureSelected;
features.Name = "Features";
// Cluster level statistics
var cluster = matchedCluster.Cluster;
AddStatistics("Mass", cluster.MassMonoisotopic);
var item = new StringTreeViewItem(
cluster.Net.ToString("F3",
CultureInfo.InvariantCulture),
"NET");
m_items.Add(item);
if (cluster.DriftTime > 0)
{
AddStatistics("Drift Time", cluster.DriftTime);
}
AddStatistics("Datasets", cluster.DatasetMemberCount);
AddStatistics("Total", cluster.MemberCount);
AddStatistics("Total MS/MS", cluster.MsMsCount);
AddStatistics("Total Identifications", cluster.IdentifiedSpectraCount);
var allIdentifications = new GenericCollectionTreeViewModel();
allIdentifications.Name = "Identifications";
// Items to display the base childen.
var identifications = new PeptideCollectionTreeViewModel(cluster);
identifications.Name = "Search Results";
identifications.FeatureSelected += feature_FeatureSelected;
var spectra = new MsMsCollectionTreeViewModel(cluster);
spectra.Name = "MS/MS";
m_spectra = spectra;
spectra.SpectrumSelected += spectra_SpectrumSelected;
spectra.FeatureSelected += feature_FeatureSelected;
var matches = new MassTagCollectionMatchTreeViewModel(matchedCluster.ClusterMatches);
matches.Name = "AMT Tags";
allIdentifications.Items.Add(identifications);
allIdentifications.Items.Add(spectra);
allIdentifications.Items.Add(matches);
m_allIdentifications = allIdentifications;
m_items.Add(features);
m_items.Add(allIdentifications);
}
