/// <summary>
/// ScoreTotal copying constructor.
/// </summary>
/// <param name="s">Score to copy.</param>
public ScoreTotal(ScoreTotal s)
: base(s)
{
this.Sm = new ScoreMean(s.Sm);
this.So = new ScoreOptimum(s.So);
this.TargetTm = s.TargetTm;
}
/// <summary>
/// Evaluate the chromosome.
/// </summary>
/// <param name="templates">List of overlap templates.</param>
/// <param name="settings">Designer settings.</param>
/// <returns>Total score of the chromosome.</returns>
public ScoreTotal Evaluate(List<Overlap> templates, DesignerSettings settings, bool ignoreHeterodimers)
{
this.ToOverlaps(templates);
bool accept = true;
foreach (Overlap o in this.Overlaps)
{
if (!o.IsAcceptable(settings.MaxTh, settings.MaxTd, ignoreHeterodimers))
{
accept = false;
break;
}
}
if (accept)
this.Score.Rescore(Overlaps);
else
this.Score = ScoreTotal.Inacceptable;
return this.Score;
}
