public void Run(Dictionary <String, Object> dict)
{
Stopwatch watch = new Stopwatch();
MOTMasterScript script = prepareScript(scriptPath, dict);
if (script != null)
{
MOTMasterSequence sequence = getSequenceFromScript(script);
try
{
prepareCameraControl();
armTranslationStageForTimedMotion(script);
GrabImage((int)script.Parameters["NumberOfFrames"]);
buildPattern(sequence, (int)script.Parameters["PatternLength"]);
waitUntilCameraIsReadyForAcquisition();
watch.Start();
runPattern(sequence);
watch.Stop();
//MessageBox.Show(watch.ElapsedMilliseconds.ToString());
if (saveEnable)
{
waitUntilCameraAquisitionIsDone();
try
{
checkDataArrived();
}
catch (DataNotArrivedFromHardwareControllerException)
{
return;
}
Dictionary <String, Object> report = GetExperimentReport();
save(script, scriptPath, imageData, report);
}
finishCameraControl();
disarmAndReturnTranslationStage();
}
catch (System.Net.Sockets.SocketException e)
{
MessageBox.Show("CameraControllable not found. \n Is there a hardware controller running? \n \n" + e.Message, "Remoting Error");
}
}
else
{
MessageBox.Show("Unable to load pattern. \n Check that the script file exists and that it compiled successfully");
}
}
private void armTranslationStageForTimedMotion(MOTMasterScript script)
{
tstage.TSConnect();
Thread.Sleep(50);
tstage.TSInitialize((double)script.Parameters["TSAcceleration"], (double)script.Parameters["TSDeceleration"],
(double)script.Parameters["TSDistance"], (double)script.Parameters["TSVelocity"]);
Thread.Sleep(50);
tstage.TSOn();
Thread.Sleep(50);
tstage.TSAutoTriggerDisable();
Thread.Sleep(50);
tstage.TSGo();
}
private void save(MOTMasterScript script, string pathToPattern, byte[][,] imageData, Dictionary<String, Object> report)
{
ioHelper.StoreRun(motMasterDataPath, controllerWindow.GetSaveBatchNumber(), pathToPattern, hardwareClassPath,
script.Parameters, report, cameraAttributesPath, imageData);
}
private MOTMasterSequence getSequenceFromScript(MOTMasterScript script)
{
MOTMasterSequence sequence = script.GetSequence();
return sequence;
}
private void armTranslationStageForTimedMotion(MOTMasterScript script)
{
tstage.TSConnect();
Thread.Sleep(50);
tstage.TSInitialize((double)script.Parameters["TSAcceleration"], (double)script.Parameters["TSDeceleration"],
(double)script.Parameters["TSDistance"], (double)script.Parameters["TSVelocity"]);
Thread.Sleep(50);
tstage.TSOn();
Thread.Sleep(50);
tstage.TSAutoTriggerDisable();
Thread.Sleep(50);
tstage.TSGo();
}
private MOTMasterSequence getSequenceFromScript(MOTMasterScript script)
{
MOTMasterSequence sequence = script.GetSequence();
return(sequence);
}
private void save(MOTMasterScript script, string pathToPattern, ushort[][,] imageData, double[,] dividedImage, double[] columnSum, double[] rowSum, Dictionary <String, Object> report)
{
ioHelper.StoreRun(motMasterDataPath, controllerWindow.GetSaveBatchNumber(), pathToPattern, hardwareClassPath,
script.Parameters, report, cameraAttributesPath, imageData, absImage, columnSum, rowSum);
}
private void save(MOTMasterScript script, string pathToPattern, ushort[,] imageData, Dictionary <String, Object> report)
{
ioHelper.StoreRun(motMasterDataPath, controllerWindow.GetSaveBatchNumber(), pathToPattern, hardwareClassPath,
script.Parameters, report, cameraAttributesPath, imageData);
}
public void Run(Dictionary <String, Object> dict)
{
Stopwatch watch = new Stopwatch();
MOTMasterScript script = prepareScript(scriptPath, dict);
if (script != null)
{
MOTMasterSequence sequence = getSequenceFromScript(script);
try
{
prepareCameraControl();
Console.WriteLine("prepared Camera Control");
armTranslationStageForTimedMotion(script);
GrabImage((int)script.Parameters["NumberOfFrames"]);
Console.WriteLine("'grabbed image'");
buildPattern(sequence, (int)script.Parameters["PatternLength"]);
Console.WriteLine("built pattern");
waitUntilCameraIsReadyForAcquisition();
watch.Start();
Console.WriteLine("watch started");
runPattern(sequence);
Console.WriteLine("sequence finished");
watch.Stop();
Console.WriteLine("watch stopped");
//MessageBox.Show(watch.ElapsedMilliseconds.ToString());
if (saveEnable)
{
Console.WriteLine("waiting for camera acquisition to finish");
waitUntilCameraAquisitionIsDone();
Console.WriteLine("waited for camera acquisition to finish");
try
{
checkDataArrived();
}
catch (DataNotArrivedFromHardwareControllerException)
{
Console.WriteLine("Data not arrived from hardware controller");
return;
}
int[] ROIforImageProcessing = { (int)script.Parameters["ROIforImageProcessingx1"], (int)script.Parameters["ROIforImageProcessingx2"], (int)script.Parameters["ROIforImageProcessingy1"], (int)script.Parameters["ROIforImageProcessingy2"] };
processImages(ROIforImageProcessing);
Console.WriteLine("processed images");
Dictionary <String, Object> report = GetExperimentReport();
Console.WriteLine("got experiment report");
if (absImage == null)
{
save(script, scriptPath, imageData, report);
}
else
{
save(script, scriptPath, imageData, absImage, columnSum, rowSum, report);
}
Console.WriteLine("saved images");
}
else
{
Console.WriteLine("waiting for camera acquisition to finish");
waitUntilCameraAquisitionIsDone();
Console.WriteLine("waited for camera acquisition to finish");
}
finishCameraControl();
Console.WriteLine("finished camera control");
disarmAndReturnTranslationStage();
}
catch (System.Net.Sockets.SocketException e)
{
MessageBox.Show("CameraControllable not found. \n Is there a hardware controller running? \n \n" + e.Message, "Remoting Error");
}
}
else
{
MessageBox.Show("Unable to load pattern. \n Check that the script file exists and that it compiled successfully");
}
}
private void save(MOTMasterScript script, string pathToPattern, Dictionary<String, Object> report)
{
ioHelper.StoreRun(motMasterDataPath, controllerWindow.GetSaveBatchNumber(), pathToPattern, hardwareClassPath,
script.Parameters, report, config.ExternalFilePattern);
}
private void save(MOTMasterScript script, string pathToPattern, Dictionary <String, Object> report)
{
ioHelper.StoreRun(motMasterDataPath, controllerWindow.GetSaveBatchNumber(), pathToPattern, hardwareClassPath,
script.Parameters, report, config.ExternalFilePattern);
}
public void Go(Dictionary <String, Object> dict)
{
status = RunningState.running;
Stopwatch watch = new Stopwatch();
MOTMasterScript script = prepareScript(scriptPath, dict);
if (script != null)
{
MOTMasterSequence sequence = getSequenceFromScript(script);
try
{
if (config.CameraUsed)
{
prepareCameraControl();
}
if (config.TranslationStageUsed)
{
armTranslationStageForTimedMotion(script);
}
if (config.CameraUsed)
{
GrabImage((int)script.Parameters["NumberOfFrames"]);
}
buildPattern(sequence, (int)script.Parameters["PatternLength"]);
if (config.CameraUsed)
{
waitUntilCameraIsReadyForAcquisition();
}
watch.Start();
if (controllerWindow.RunUntilStoppedState)
{
while (status == RunningState.running)
{
if (!config.Debug)
{
runPattern(sequence);
}
}
}
else
{
for (int i = 0; i < controllerWindow.GetIterations() && status == RunningState.running; i++)
{
if (!config.Debug)
{
runPattern(sequence);
}
}
}
if (!config.Debug)
{
clearDigitalPattern(sequence);
}
watch.Stop();
//MessageBox.Show(watch.ElapsedMilliseconds.ToString());
if (saveEnable)
{
if (config.CameraUsed)
{
waitUntilCameraAquisitionIsDone();
try
{
checkDataArrived();
}
catch (DataNotArrivedFromHardwareControllerException)
{
return;
}
Dictionary <String, Object> report = null;
if (config.ReporterUsed)
{
report = GetExperimentReport();
}
save(script, scriptPath, imageData, report);
}
else
{
Dictionary <String, Object> report = null;
if (config.ReporterUsed)
{
report = GetExperimentReport();
}
save(script, scriptPath, report);
}
}
if (config.CameraUsed)
{
finishCameraControl();
}
if (config.TranslationStageUsed)
{
disarmAndReturnTranslationStage();
}
}
catch (System.Net.Sockets.SocketException e)
{
MessageBox.Show("CameraControllable not found. \n Is there a hardware controller running? \n \n" + e.Message, "Remoting Error");
}
}
else
{
MessageBox.Show("Unable to load pattern. \n Check that the script file exists and that it compiled successfully");
}
status = RunningState.stopped;
}
// ONGOING: these save functions should probably take a sequence argument
private void save(MOTMasterSequence sequence, MOTMasterScript script, string pathToPattern, byte[][,] imageData, Dictionary <String, Object> report)
{
ioHelper.StoreRun(motMasterDataPath, controllerWindow.GetSaveBatchNumber(), pathToPattern, hardwareClassPath,
sequence, script.Parameters, report, cameraAttributesPath, imageData, externalFilesPath, config.ExternalFilePattern);
}