private void SaveParameters(MFEInputParameters mfeInputParams)
{
IPSetAlignmentInfo pSetAlignmentInfo = mfeInputParams.AllParameters[MFEPSetKeys.ALIGNMENT_INFO] as IPSetAlignmentInfo;
IPSetChargeStateAssignment chargeStateInfo = mfeInputParams.AllParameters[MFEPSetKeys.CHARGE_STATE_ASSIGNMENT] as IPSetChargeStateAssignment;
IPSetMassHunterProcessing mfeProcessingInfo = mfeInputParams.AllParameters[MFEPSetKeys.MASS_HUNTER_PROCESSING] as IPSetMassHunterProcessing;
PSetCpdGroupFilters filterInfo = mfeInputParams.AllParameters[MFEPSetKeys.MFE_CPD_GROUP_FILTERS] as PSetCpdGroupFilters;
InputParametersUtil.SavePSet(qualAppLogic, pSetAlignmentInfo, QualDAMethod.ParamKeyAlignmentInformation);
InputParametersUtil.SavePSet(qualAppLogic, chargeStateInfo, QualDAMethod.ParamKeyMSChargeStateAssignment);
InputParametersUtil.SavePSet(qualAppLogic, mfeProcessingInfo, QualDAMethod.ParamKeyMFEProcessing);
InputParametersUtil.SavePSet(qualAppLogic, filterInfo, QualDAMethod.ParamKeyCpdGroupFilters);
}
public MFEInputParameters GetParameters()
{
MFEInputParameters mfeInputParams = new MFEInputParameters();
IPSetAlignmentInfo pSetAlignment = InputParametersUtil.GetAlignmentParameters(qualAppLogic);
mfeInputParams.AllParameters.Add(MFEPSetKeys.ALIGNMENT_INFO, pSetAlignment);
IPSetMassHunterProcessing extractionParams = InputParametersUtil.GetMFEProcessingParameters(qualAppLogic);
mfeInputParams.AllParameters.Add(MFEPSetKeys.MASS_HUNTER_PROCESSING, extractionParams);
IPSetChargeStateAssignment chargestateParams = InputParametersUtil.GetChargeStateParameters(qualAppLogic);
mfeInputParams.AllParameters.Add(MFEPSetKeys.CHARGE_STATE_ASSIGNMENT, chargestateParams);
PSetCpdGroupFilters filterInfo = InputParametersUtil.GetFilterParameters(qualAppLogic);
mfeInputParams.AllParameters.Add(MFEPSetKeys.MFE_CPD_GROUP_FILTERS, filterInfo);
return(mfeInputParams);
}
private List <Analysis> CreateAnalysis(List <DataTypes.ISample> samples)
{
var psetFileList = new PSetDataFileList();
foreach (DataTypes.ISample sample in samples)
{
if (sample.HideOrShow)
{
List <string> sampleGroupTitles = sample.GetDefaultGroupingTitles();
List <string> sampleGroups = sample.GetDefaultSampleGroups();
psetFileList.SelectedFileName.Add(new BatchExtractorFileSelect(sample.FileName, sample.HideOrShow, sampleGroups, sampleGroupTitles));
}
}
InputParametersUtil.SavePSet(qualAppLogic, psetFileList, QualInMemoryMethod.ParamDataFileList);
Console.WriteLine("Creating Analysis");
List <Analysis> Analyses = new List <Analysis>();
if (m_analysisFiles.Count <= 0)
{
return(Analyses);
}
AnalysisMethodLoadOptions loadMethod = AnalysisMethodLoadOptions.LoadFromWorklist;
bool loadResults = false;
bool runLoadTimeScripts = false;
CmdOpenAnalysisFile cmdOpenAnalysis = new CmdOpenAnalysisFile
(qualAppLogic,
m_analysisFiles.ToArray(),
loadMethod,
loadResults,
runLoadTimeScripts);
ExecuteCommand(qualAppLogic, cmdOpenAnalysis);
foreach (string analysisPath in m_analysisFiles)
{
Analysis anlysis = qualAppLogic.DataHeirarchy.AnalysisStore.Values.Cast <Analysis>().First(a => a.FilePath == analysisPath);
Analyses.Add(anlysis);
}
Console.WriteLine("Analysis Creation Done");
return(Analyses);
}
