public static ISiteVar <double> AnnualClimaticWaterDeficit; //Annual soil moisture calculation, defined as pet - aet
//---------------------------------------------------------------------
/// <summary>
/// Initializes the module.
/// </summary>
public static void Initialize()
{
cohorts = PlugIn.ModelCore.Landscape.NewSiteVar <Library.LeafBiomassCohorts.SiteCohorts>();
biomassCohortsSiteVar = Landis.Library.Succession.CohortSiteVar <Landis.Library.BiomassCohorts.ISiteCohorts> .Wrap(cohorts);
baseCohortsSiteVar = Landis.Library.Succession.CohortSiteVar <Landis.Library.AgeOnlyCohorts.ISiteCohorts> .Wrap(cohorts);
fineFuels = PlugIn.ModelCore.Landscape.NewSiteVar <double>();
timeOfLast = PlugIn.ModelCore.Landscape.NewSiteVar <int>();
// Dead biomass:
surfaceDeadWood = PlugIn.ModelCore.Landscape.NewSiteVar <Layer>();
soilDeadWood = PlugIn.ModelCore.Landscape.NewSiteVar <Layer>();
surfaceStructural = PlugIn.ModelCore.Landscape.NewSiteVar <Layer>();
surfaceMetabolic = PlugIn.ModelCore.Landscape.NewSiteVar <Layer>();
soilStructural = PlugIn.ModelCore.Landscape.NewSiteVar <Layer>();
soilMetabolic = PlugIn.ModelCore.Landscape.NewSiteVar <Layer>();
// Soil Layers
som1surface = PlugIn.ModelCore.Landscape.NewSiteVar <Layer>();
som1soil = PlugIn.ModelCore.Landscape.NewSiteVar <Layer>();
som2 = PlugIn.ModelCore.Landscape.NewSiteVar <Layer>();
som3 = PlugIn.ModelCore.Landscape.NewSiteVar <Layer>();
soilDepth = PlugIn.ModelCore.Landscape.NewSiteVar <int>();
soilDrain = PlugIn.ModelCore.Landscape.NewSiteVar <double>();
soilBaseFlowFraction = PlugIn.ModelCore.Landscape.NewSiteVar <double>();
soilStormFlowFraction = PlugIn.ModelCore.Landscape.NewSiteVar <double>();
soilFieldCapacity = PlugIn.ModelCore.Landscape.NewSiteVar <double>();
soilWiltingPoint = PlugIn.ModelCore.Landscape.NewSiteVar <double>();
soilPercentSand = PlugIn.ModelCore.Landscape.NewSiteVar <double>();
soilPercentClay = PlugIn.ModelCore.Landscape.NewSiteVar <double>();
// Other Layers
stream = PlugIn.ModelCore.Landscape.NewSiteVar <Layer>();
sourceSink = PlugIn.ModelCore.Landscape.NewSiteVar <Layer>();
// Other variables
monthlyLAI = PlugIn.ModelCore.Landscape.NewSiteVar <double[]>();
mineralN = PlugIn.ModelCore.Landscape.NewSiteVar <double>();
resorbedN = PlugIn.ModelCore.Landscape.NewSiteVar <double>();
waterMovement = PlugIn.ModelCore.Landscape.NewSiteVar <double>();
availableWater = PlugIn.ModelCore.Landscape.NewSiteVar <double>();
liquidSnowPack = PlugIn.ModelCore.Landscape.NewSiteVar <double>();
soilWaterContent = PlugIn.ModelCore.Landscape.NewSiteVar <double>();
decayFactor = PlugIn.ModelCore.Landscape.NewSiteVar <double>();
soilTemperature = PlugIn.ModelCore.Landscape.NewSiteVar <double>();
anaerobicEffect = PlugIn.ModelCore.Landscape.NewSiteVar <double>();
dryDays = PlugIn.ModelCore.Landscape.NewSiteVar <int>();
// Annual accumulators
grossMineralization = PlugIn.ModelCore.Landscape.NewSiteVar <double>();
ag_nppC = PlugIn.ModelCore.Landscape.NewSiteVar <double>();
bg_nppC = PlugIn.ModelCore.Landscape.NewSiteVar <double>();
litterfallC = PlugIn.ModelCore.Landscape.NewSiteVar <double>();
monthlyAGNPPC = PlugIn.ModelCore.Landscape.NewSiteVar <double[]>();
monthlyBGNPPC = PlugIn.ModelCore.Landscape.NewSiteVar <double[]>();
monthlyNEE = PlugIn.ModelCore.Landscape.NewSiteVar <double[]>();
monthlyStreamN = PlugIn.ModelCore.Landscape.NewSiteVar <double[]>();
AnnualNEE = PlugIn.ModelCore.Landscape.NewSiteVar <double>();
FireCEfflux = PlugIn.ModelCore.Landscape.NewSiteVar <double>();
FireNEfflux = PlugIn.ModelCore.Landscape.NewSiteVar <double>();
monthlyResp = PlugIn.ModelCore.Landscape.NewSiteVar <double[]>();
cohortLeafN = PlugIn.ModelCore.Landscape.NewSiteVar <double>();
cohortFRootN = PlugIn.ModelCore.Landscape.NewSiteVar <double>();
cohortLeafC = PlugIn.ModelCore.Landscape.NewSiteVar <double>();
cohortFRootC = PlugIn.ModelCore.Landscape.NewSiteVar <double>();
cohortWoodN = PlugIn.ModelCore.Landscape.NewSiteVar <double>();
cohortCRootN = PlugIn.ModelCore.Landscape.NewSiteVar <double>();
cohortWoodC = PlugIn.ModelCore.Landscape.NewSiteVar <double>();
cohortCRootC = PlugIn.ModelCore.Landscape.NewSiteVar <double>();
TotalWoodBiomass = PlugIn.ModelCore.Landscape.NewSiteVar <double>();
WoodMortality = PlugIn.ModelCore.Landscape.NewSiteVar <double>();
Nvol = PlugIn.ModelCore.Landscape.NewSiteVar <double>();
PrevYearMortality = PlugIn.ModelCore.Landscape.NewSiteVar <int>();
totalNuptake = PlugIn.ModelCore.Landscape.NewSiteVar <double>();
monthlymineralN = PlugIn.ModelCore.Landscape.NewSiteVar <double[]>();
frassC = PlugIn.ModelCore.Landscape.NewSiteVar <double>();
lai = PlugIn.ModelCore.Landscape.NewSiteVar <double>();
annualPPT_AET = PlugIn.ModelCore.Landscape.NewSiteVar <double>();
AnnualClimaticWaterDeficit = PlugIn.ModelCore.Landscape.NewSiteVar <double>();
SmolderConsumption = PlugIn.ModelCore.Landscape.NewSiteVar <double>();
FlamingConsumption = PlugIn.ModelCore.Landscape.NewSiteVar <double>();
HarvestPrescriptionName = PlugIn.ModelCore.GetSiteVar <string>("Harvest.PrescriptionName");
//HarvestTime = PlugIn.ModelCore.GetSiteVar<int>("Harvest.TimeOfLastEvent");
HarvestTime = PlugIn.ModelCore.Landscape.NewSiteVar <int>();
CohortResorbedNallocation = PlugIn.ModelCore.Landscape.NewSiteVar <Dictionary <int, Dictionary <int, double> > >();
PlugIn.ModelCore.RegisterSiteVar(cohorts, "Succession.LeafBiomassCohorts");
PlugIn.ModelCore.RegisterSiteVar(baseCohortsSiteVar, "Succession.AgeCohorts");
PlugIn.ModelCore.RegisterSiteVar(biomassCohortsSiteVar, "Succession.BiomassCohorts");
PlugIn.ModelCore.RegisterSiteVar(SiteVars.FineFuels, "Succession.FineFuels");
PlugIn.ModelCore.RegisterSiteVar(SiteVars.SmolderConsumption, "Succession.SmolderConsumption");
PlugIn.ModelCore.RegisterSiteVar(SiteVars.FlamingConsumption, "Succession.FlamingConsumption");
PlugIn.ModelCore.RegisterSiteVar(SiteVars.AnnualClimaticWaterDeficit, "Succession.CWD");
foreach (ActiveSite site in PlugIn.ModelCore.Landscape)
{
surfaceDeadWood[site] = new Layer(LayerName.Wood, LayerType.Surface);
soilDeadWood[site] = new Layer(LayerName.CoarseRoot, LayerType.Soil);
surfaceStructural[site] = new Layer(LayerName.Structural, LayerType.Surface);
surfaceMetabolic[site] = new Layer(LayerName.Metabolic, LayerType.Surface);
soilStructural[site] = new Layer(LayerName.Structural, LayerType.Soil);
soilMetabolic[site] = new Layer(LayerName.Metabolic, LayerType.Soil);
som1surface[site] = new Layer(LayerName.SOM1, LayerType.Surface);
som1soil[site] = new Layer(LayerName.SOM1, LayerType.Soil);
som2[site] = new Layer(LayerName.SOM2, LayerType.Soil);
som3[site] = new Layer(LayerName.SOM3, LayerType.Soil);
stream[site] = new Layer(LayerName.Other, LayerType.Other);
sourceSink[site] = new Layer(LayerName.Other, LayerType.Other);
monthlyAGNPPC[site] = new double[12];
monthlyBGNPPC[site] = new double[12];
monthlyNEE[site] = new double[12];
monthlyStreamN[site] = new double[12];
monthlyResp[site] = new double[12];
monthlyLAI[site] = new double[12];
//monthlymineralN[site] = new double[12];
CohortResorbedNallocation[site] = new Dictionary <int, Dictionary <int, double> >();
}
}