//STUB PATIENTS;
#region
public IEnumerable<Patient> GenerateStubExamples()
{
//stub1
var stub1 = new Patient();
var name1 = new HumanName();
name1.Family = new List<string> {"Odenkirk"};
name1.Given = new List<string> { "Bob" };
stub1.Name = new List<HumanName> { name1 };
stub1.Id = "b3tter_c@ll_$@ul";
stub1.Gender = AdministrativeGender.Male;
//stub2
var stub2 = new Patient();
var name2 = new HumanName();
name2.Family = new List<string> { "Saggot" };
name2.Given = new List<string> { "Bob" };
stub2.Name = new List<HumanName> { name2 };
stub2.Id = "full_house789";
stub2.Gender = AdministrativeGender.Male;
//stub3
var stub3 = new Patient();
var name3 = new HumanName();
name3.Family = new List<string> { "Jones" };
name3.Given = new List<string> { "Jessica" };
stub3.Name = new List<HumanName> { name3 };
stub3.Id = "m@r3lou$";
stub3.Gender = AdministrativeGender.Female;
return new List<Patient> { stub1, stub2, stub3};
}
public static HumanName ForFamily(string family)
{
var result = new HumanName();
result.Family = new string[] { family };
return result;
}
public static Patient Patient()
{
Patient patient = new Patient();
patient.Id = "patient/1";
HumanName h = new HumanName().WithGiven("Martijn");
patient.Name = new List<HumanName>();
patient.Name.Add(h);
return patient;
}
public static Patient NewPatient(string family, params string[] given)
{
Patient p = new Patient();
HumanName n = new HumanName();
foreach (string g in given) { n.WithGiven(g); }
n.AndFamily(family);
p.Name = new List<HumanName>();
p.Name.Add(n);
return p;
}
public void TestVisitOnePathOneMatch()
{
ElementQuery sut = new ElementQuery("Patient.name");
Patient testPatient = new Patient();
var hn = new HumanName().WithGiven("Sjors").AndFamily("Jansen");
testPatient.Name = new List<HumanName> { hn };
var result = new List<Object>();
sut.Visit(testPatient, fd => result.Add(fd));
Assert.AreEqual(testPatient.Name.Count, result.Where(ob => ob != null).Count());
Assert.IsTrue(result.Contains(hn));
}
public void TestVisitOnePathTwoMatches()
{
ElementQuery sut = new ElementQuery("Patient.name");
Patient testPatient = new Patient();
var hn1 = new HumanName().WithGiven("A").AndFamily("B");
var hn2 = new HumanName().WithGiven("Y").AndFamily("Z");
testPatient.Name = new List<HumanName> { hn1, hn2 };
var result = new List<Object>();
sut.Visit(testPatient, fd => result.Add(fd));
Assert.AreEqual(testPatient.Name.Count, result.Where(ob => ob != null).Count());
Assert.IsTrue(result.Contains(hn1));
Assert.IsTrue(result.Contains(hn2));
}
private void cmdCreatePatient_Click(object sender, EventArgs e)
{
// Code for creating a patient here.
// Patientidentifier variables
var MyPatient = new Hl7.Fhir.Model.Patient();
var PatientName = new Hl7.Fhir.Model.HumanName();
PatientName.Use = Hl7.Fhir.Model.HumanName.NameUse.Official;
string patientFirstName = txtFirstName.Text;
string patientSurname = txtSurname.Text;
string patientTitle = cmbPatientTitle.Text;
string patientNumber = txtPatientNum.Text;
PatientName.Prefix = new string[] { patientTitle };
PatientName.Given = new string[] { patientFirstName };
PatientName.Family = new string[] { patientSurname };
MyPatient.Name = new List <Hl7.Fhir.Model.HumanName>();
MyPatient.Name.Add(PatientName);
// Institution patient identifiers
var PatientIdentifier = new Hl7.Fhir.Model.Identifier();
PatientIdentifier.System = "https://medical-test.net";
PatientIdentifier.Value = patientNumber;
MyPatient.Identifier = new List <Hl7.Fhir.Model.Identifier>();
MyPatient.Identifier.Add(PatientIdentifier);
string xml = Hl7.Fhir.Serialization.FhirSerializer.SerializeResourceToXml(MyPatient);
XDocument xDoc = XDocument.Parse(xml);
txtOutput.Text = xDoc.ToString();
}
public void Write(Definition definition, HumanName name)
{
Write(definition, name.Given);
Write(definition, name.Prefix);
Write(definition, name.Family);
Write(definition, name.Suffix);
//Write(definition, name.Use.ToString());
}
public static void SerializeHumanName(Hl7.Fhir.Model.HumanName value, IFhirWriter writer, bool summary)
{
writer.WriteStartComplexContent();
// Serialize element _id
if (value.LocalIdElement != null)
{
writer.WritePrimitiveContents("_id", value.LocalIdElement, XmlSerializationHint.Attribute);
}
// Serialize element extension
if (value.Extension != null && !summary && value.Extension.Count > 0)
{
writer.WriteStartArrayElement("extension");
foreach (var item in value.Extension)
{
writer.WriteStartArrayMember("extension");
ExtensionSerializer.SerializeExtension(item, writer, summary);
writer.WriteEndArrayMember();
}
writer.WriteEndArrayElement();
}
// Serialize element use
if (value.UseElement != null)
{
writer.WriteStartElement("use");
CodeSerializer.SerializeCode <Hl7.Fhir.Model.HumanName.NameUse>(value.UseElement, writer, summary);
writer.WriteEndElement();
}
// Serialize element text
if (value.TextElement != null)
{
writer.WriteStartElement("text");
FhirStringSerializer.SerializeFhirString(value.TextElement, writer, summary);
writer.WriteEndElement();
}
// Serialize element family
if (value.FamilyElement != null && value.FamilyElement.Count > 0)
{
writer.WriteStartArrayElement("family");
foreach (var item in value.FamilyElement)
{
writer.WriteStartArrayMember("family");
FhirStringSerializer.SerializeFhirString(item, writer, summary);
writer.WriteEndArrayMember();
}
writer.WriteEndArrayElement();
}
// Serialize element given
if (value.GivenElement != null && value.GivenElement.Count > 0)
{
writer.WriteStartArrayElement("given");
foreach (var item in value.GivenElement)
{
writer.WriteStartArrayMember("given");
FhirStringSerializer.SerializeFhirString(item, writer, summary);
writer.WriteEndArrayMember();
}
writer.WriteEndArrayElement();
}
// Serialize element prefix
if (value.PrefixElement != null && value.PrefixElement.Count > 0)
{
writer.WriteStartArrayElement("prefix");
foreach (var item in value.PrefixElement)
{
writer.WriteStartArrayMember("prefix");
FhirStringSerializer.SerializeFhirString(item, writer, summary);
writer.WriteEndArrayMember();
}
writer.WriteEndArrayElement();
}
// Serialize element suffix
if (value.SuffixElement != null && value.SuffixElement.Count > 0)
{
writer.WriteStartArrayElement("suffix");
foreach (var item in value.SuffixElement)
{
writer.WriteStartArrayMember("suffix");
FhirStringSerializer.SerializeFhirString(item, writer, summary);
writer.WriteEndArrayMember();
}
writer.WriteEndArrayElement();
}
// Serialize element period
if (value.Period != null)
{
writer.WriteStartElement("period");
PeriodSerializer.SerializePeriod(value.Period, writer, summary);
writer.WriteEndElement();
}
writer.WriteEndComplexContent();
}
public void HumanNameOnlyGivenMapTest()
{
var input = new HumanName();
input.WithGiven("Pietje");
var result = sut.Map(input);
Assert.AreEqual(1, result.Count()); //2 line elements + city, country and postalcode.
foreach (var res in result)
{
Assert.IsInstanceOfType(res, typeof(StringValue));
}
Assert.AreEqual(1, result.Where(r => (r as StringValue).Value == "Pietje").Count());
}
/// <summary>
/// Deserialize JSON into a FHIR Practitioner
/// </summary>
public static void DeserializeJsonProperty(this Practitioner current, ref Utf8JsonReader reader, JsonSerializerOptions options, string propertyName)
{
switch (propertyName)
{
case "identifier":
if ((reader.TokenType != JsonTokenType.StartArray) || (!reader.Read()))
{
throw new JsonException($"Practitioner error reading 'identifier' expected StartArray, found {reader.TokenType}! depth: {reader.CurrentDepth}, pos: {reader.BytesConsumed}");
}
current.Identifier = new List <Identifier>();
while (reader.TokenType != JsonTokenType.EndArray)
{
Hl7.Fhir.Model.Identifier v_Identifier = new Hl7.Fhir.Model.Identifier();
v_Identifier.DeserializeJson(ref reader, options);
current.Identifier.Add(v_Identifier);
if (!reader.Read())
{
throw new JsonException($"Practitioner error reading 'identifier' array, read failed! depth: {reader.CurrentDepth}, pos: {reader.BytesConsumed}");
}
if (reader.TokenType == JsonTokenType.EndObject)
{
reader.Read();
}
}
if (current.Identifier.Count == 0)
{
current.Identifier = null;
}
break;
case "active":
if (reader.TokenType == JsonTokenType.Null)
{
current.ActiveElement = new FhirBoolean();
reader.Skip();
}
else
{
current.ActiveElement = new FhirBoolean(reader.GetBoolean());
}
break;
case "_active":
if (current.ActiveElement == null)
{
current.ActiveElement = new FhirBoolean();
}
((Hl7.Fhir.Model.Element)current.ActiveElement).DeserializeJson(ref reader, options);
break;
case "name":
if ((reader.TokenType != JsonTokenType.StartArray) || (!reader.Read()))
{
throw new JsonException($"Practitioner error reading 'name' expected StartArray, found {reader.TokenType}! depth: {reader.CurrentDepth}, pos: {reader.BytesConsumed}");
}
current.Name = new List <HumanName>();
while (reader.TokenType != JsonTokenType.EndArray)
{
Hl7.Fhir.Model.HumanName v_Name = new Hl7.Fhir.Model.HumanName();
v_Name.DeserializeJson(ref reader, options);
current.Name.Add(v_Name);
if (!reader.Read())
{
throw new JsonException($"Practitioner error reading 'name' array, read failed! depth: {reader.CurrentDepth}, pos: {reader.BytesConsumed}");
}
if (reader.TokenType == JsonTokenType.EndObject)
{
reader.Read();
}
}
if (current.Name.Count == 0)
{
current.Name = null;
}
break;
case "telecom":
if ((reader.TokenType != JsonTokenType.StartArray) || (!reader.Read()))
{
throw new JsonException($"Practitioner error reading 'telecom' expected StartArray, found {reader.TokenType}! depth: {reader.CurrentDepth}, pos: {reader.BytesConsumed}");
}
current.Telecom = new List <ContactPoint>();
while (reader.TokenType != JsonTokenType.EndArray)
{
Hl7.Fhir.Model.ContactPoint v_Telecom = new Hl7.Fhir.Model.ContactPoint();
v_Telecom.DeserializeJson(ref reader, options);
current.Telecom.Add(v_Telecom);
if (!reader.Read())
{
throw new JsonException($"Practitioner error reading 'telecom' array, read failed! depth: {reader.CurrentDepth}, pos: {reader.BytesConsumed}");
}
if (reader.TokenType == JsonTokenType.EndObject)
{
reader.Read();
}
}
if (current.Telecom.Count == 0)
{
current.Telecom = null;
}
break;
case "address":
if ((reader.TokenType != JsonTokenType.StartArray) || (!reader.Read()))
{
throw new JsonException($"Practitioner error reading 'address' expected StartArray, found {reader.TokenType}! depth: {reader.CurrentDepth}, pos: {reader.BytesConsumed}");
}
current.Address = new List <Address>();
while (reader.TokenType != JsonTokenType.EndArray)
{
Hl7.Fhir.Model.Address v_Address = new Hl7.Fhir.Model.Address();
v_Address.DeserializeJson(ref reader, options);
current.Address.Add(v_Address);
if (!reader.Read())
{
throw new JsonException($"Practitioner error reading 'address' array, read failed! depth: {reader.CurrentDepth}, pos: {reader.BytesConsumed}");
}
if (reader.TokenType == JsonTokenType.EndObject)
{
reader.Read();
}
}
if (current.Address.Count == 0)
{
current.Address = null;
}
break;
case "gender":
if (reader.TokenType == JsonTokenType.Null)
{
current.GenderElement = new Code <Hl7.Fhir.Model.AdministrativeGender>();
reader.Skip();
}
else
{
current.GenderElement = new Code <Hl7.Fhir.Model.AdministrativeGender>(Hl7.Fhir.Utility.EnumUtility.ParseLiteral <Hl7.Fhir.Model.AdministrativeGender>(reader.GetString()));
}
break;
case "_gender":
if (current.GenderElement == null)
{
current.GenderElement = new Code <Hl7.Fhir.Model.AdministrativeGender>();
}
((Hl7.Fhir.Model.Element)current.GenderElement).DeserializeJson(ref reader, options);
break;
case "birthDate":
if (reader.TokenType == JsonTokenType.Null)
{
current.BirthDateElement = new Date();
reader.Skip();
}
else
{
current.BirthDateElement = new Date(reader.GetString());
}
break;
case "_birthDate":
if (current.BirthDateElement == null)
{
current.BirthDateElement = new Date();
}
((Hl7.Fhir.Model.Element)current.BirthDateElement).DeserializeJson(ref reader, options);
break;
case "photo":
if ((reader.TokenType != JsonTokenType.StartArray) || (!reader.Read()))
{
throw new JsonException($"Practitioner error reading 'photo' expected StartArray, found {reader.TokenType}! depth: {reader.CurrentDepth}, pos: {reader.BytesConsumed}");
}
current.Photo = new List <Attachment>();
while (reader.TokenType != JsonTokenType.EndArray)
{
Hl7.Fhir.Model.Attachment v_Photo = new Hl7.Fhir.Model.Attachment();
v_Photo.DeserializeJson(ref reader, options);
current.Photo.Add(v_Photo);
if (!reader.Read())
{
throw new JsonException($"Practitioner error reading 'photo' array, read failed! depth: {reader.CurrentDepth}, pos: {reader.BytesConsumed}");
}
if (reader.TokenType == JsonTokenType.EndObject)
{
reader.Read();
}
}
if (current.Photo.Count == 0)
{
current.Photo = null;
}
break;
case "qualification":
if ((reader.TokenType != JsonTokenType.StartArray) || (!reader.Read()))
{
throw new JsonException($"Practitioner error reading 'qualification' expected StartArray, found {reader.TokenType}! depth: {reader.CurrentDepth}, pos: {reader.BytesConsumed}");
}
current.Qualification = new List <Practitioner.QualificationComponent>();
while (reader.TokenType != JsonTokenType.EndArray)
{
Hl7.Fhir.Model.Practitioner.QualificationComponent v_Qualification = new Hl7.Fhir.Model.Practitioner.QualificationComponent();
v_Qualification.DeserializeJson(ref reader, options);
current.Qualification.Add(v_Qualification);
if (!reader.Read())
{
throw new JsonException($"Practitioner error reading 'qualification' array, read failed! depth: {reader.CurrentDepth}, pos: {reader.BytesConsumed}");
}
if (reader.TokenType == JsonTokenType.EndObject)
{
reader.Read();
}
}
if (current.Qualification.Count == 0)
{
current.Qualification = null;
}
break;
case "communication":
if ((reader.TokenType != JsonTokenType.StartArray) || (!reader.Read()))
{
throw new JsonException($"Practitioner error reading 'communication' expected StartArray, found {reader.TokenType}! depth: {reader.CurrentDepth}, pos: {reader.BytesConsumed}");
}
current.Communication = new List <CodeableConcept>();
while (reader.TokenType != JsonTokenType.EndArray)
{
Hl7.Fhir.Model.CodeableConcept v_Communication = new Hl7.Fhir.Model.CodeableConcept();
v_Communication.DeserializeJson(ref reader, options);
current.Communication.Add(v_Communication);
if (!reader.Read())
{
throw new JsonException($"Practitioner error reading 'communication' array, read failed! depth: {reader.CurrentDepth}, pos: {reader.BytesConsumed}");
}
if (reader.TokenType == JsonTokenType.EndObject)
{
reader.Read();
}
}
if (current.Communication.Count == 0)
{
current.Communication = null;
}
break;
// Complex: Practitioner, Export: Practitioner, Base: DomainResource
default:
((Hl7.Fhir.Model.DomainResource)current).DeserializeJsonProperty(ref reader, options, propertyName);
break;
}
}
/// <summary>
/// Parse HumanName
/// </summary>
public static Hl7.Fhir.Model.HumanName ParseHumanName(IFhirReader reader, ErrorList errors, Hl7.Fhir.Model.HumanName existingInstance = null)
{
Hl7.Fhir.Model.HumanName result = existingInstance != null ? existingInstance : new Hl7.Fhir.Model.HumanName();
string currentElementName = reader.CurrentElementName;
reader.EnterElement();
while (reader.HasMoreElements())
{
var atName = reader.CurrentElementName;
// Parse element extension
if (atName == "extension")
{
result.Extension = new List <Hl7.Fhir.Model.Extension>();
reader.EnterArray();
while (ParserUtils.IsAtArrayElement(reader, "extension"))
{
result.Extension.Add(ExtensionParser.ParseExtension(reader, errors));
}
reader.LeaveArray();
}
// Parse element _id
else if (atName == "_id")
{
result.LocalIdElement = Id.Parse(reader.ReadPrimitiveContents(typeof(Id)));
}
// Parse element use
else if (atName == "use")
{
result.UseElement = CodeParser.ParseCode <Hl7.Fhir.Model.HumanName.NameUse>(reader, errors);
}
// Parse element text
else if (atName == "text")
{
result.TextElement = FhirStringParser.ParseFhirString(reader, errors);
}
// Parse element family
else if (atName == "family")
{
result.FamilyElement = new List <Hl7.Fhir.Model.FhirString>();
reader.EnterArray();
while (ParserUtils.IsAtArrayElement(reader, "family"))
{
result.FamilyElement.Add(FhirStringParser.ParseFhirString(reader, errors));
}
reader.LeaveArray();
}
// Parse element given
else if (atName == "given")
{
result.GivenElement = new List <Hl7.Fhir.Model.FhirString>();
reader.EnterArray();
while (ParserUtils.IsAtArrayElement(reader, "given"))
{
result.GivenElement.Add(FhirStringParser.ParseFhirString(reader, errors));
}
reader.LeaveArray();
}
// Parse element prefix
else if (atName == "prefix")
{
result.PrefixElement = new List <Hl7.Fhir.Model.FhirString>();
reader.EnterArray();
while (ParserUtils.IsAtArrayElement(reader, "prefix"))
{
result.PrefixElement.Add(FhirStringParser.ParseFhirString(reader, errors));
}
reader.LeaveArray();
}
// Parse element suffix
else if (atName == "suffix")
{
result.SuffixElement = new List <Hl7.Fhir.Model.FhirString>();
reader.EnterArray();
while (ParserUtils.IsAtArrayElement(reader, "suffix"))
{
result.SuffixElement.Add(FhirStringParser.ParseFhirString(reader, errors));
}
reader.LeaveArray();
}
// Parse element period
else if (atName == "period")
{
result.Period = PeriodParser.ParsePeriod(reader, errors);
}
else
{
errors.Add(String.Format("Encountered unknown element {0} while parsing {1}", reader.CurrentElementName, currentElementName), reader);
reader.SkipSubElementsFor(currentElementName);
result = null;
}
}
reader.LeaveElement();
return(result);
}
public void ResourceWithExtensionAndNarrative()
{
HumanName name = new HumanName().WithGiven("Wouter").WithGiven("Gert")
.AndFamily("van der").AndFamily("Vlies");
name.FamilyElement[0].AddExtension(new Uri("http://hl7.org/fhir/profile/@iso-21090#name-qualifier"),
new Code("VV"));
Patient p = new Patient()
{
LocalId = "Ab4",
Identifier = new List<Identifier> { new Identifier { Key = "3141" } },
BirthDateElement = new FhirDateTime(1972, 11, 30),
Name = new List<HumanName> { name },
Text = new Narrative()
{
Status = Narrative.NarrativeStatus.Generated,
Div = "<div xmlns='http://www.w3.org/1999/xhtml'>Patient 3141 - Wouter Gert, nov. 30th, 1972</div>"
},
Contained = new List<Resource>() { new List() { Mode = List.ListMode.Snapshot } }
};
Assert.AreEqual(@"<?xml version=""1.0"" encoding=""utf-16""?>" +
@"<Patient id=""Ab4"" xmlns=""http://hl7.org/fhir"">" +
@"<text><status value=""generated"" /><div xmlns='http://www.w3.org/1999/xhtml'>Patient 3141 - Wouter Gert, nov. 30th, 1972</div></text>" +
@"<contained><List><mode value=""snapshot"" /></List></contained>" +
@"<identifier><key value=""3141"" /></identifier>" +
@"<name>" +
@"<family value=""van der"">" +
@"<extension><url value=""http://hl7.org/fhir/profile/@iso-21090#name-qualifier"" /><valueCode value=""VV"" /></extension>" +
@"</family><family value=""Vlies"" /><given value=""Wouter"" /><given value=""Gert"" /></name>" +
@"<birthDate value=""1972-11-30"" />" +
@"</Patient>", FhirSerializer.SerializeResourceToXml(p));
Assert.AreEqual(@"{""Patient"":{""_id"":""Ab4""," +
@"""text"":{""status"":{""value"":""generated""},""div"":""<div xmlns='http://www.w3.org/1999/xhtml'>" +
@"Patient 3141 - Wouter Gert, nov. 30th, 1972</div>""},"+
@"""contained"":[{""List"":{""mode"":{""value"":""snapshot""}}}],"+
@"""identifier"":[{""key"":{""value"":""3141""}}]," +
@"""name"":[{""family"":[{""value"":""van der""," +
@"""extension"":[{""url"":{""value"":""http://hl7.org/fhir/profile/@iso-21090#name-qualifier""},""valueCode"":{""value"":""VV""}}]}," +
@"{""value"":""Vlies""}],""given"":[{""value"":""Wouter""},{""value"":""Gert""}]}],""birthDate"":{""value"":""1972-11-30""}" +
@"}}", FhirSerializer.SerializeResourceToJson(p));
}
