/// <summary>
/// Deserialize JSON into a FHIR CodeableConcept
/// </summary>
public static void DeserializeJsonProperty(this CodeableConcept current, ref Utf8JsonReader reader, JsonSerializerOptions options, string propertyName)
{
switch (propertyName)
{
case "coding":
if ((reader.TokenType != JsonTokenType.StartArray) || (!reader.Read()))
{
throw new JsonException($"CodeableConcept error reading 'coding' expected StartArray, found {reader.TokenType}! depth: {reader.CurrentDepth}, pos: {reader.BytesConsumed}");
}
current.Coding = new List <Coding>();
while (reader.TokenType != JsonTokenType.EndArray)
{
Hl7.Fhir.Model.Coding v_Coding = new Hl7.Fhir.Model.Coding();
v_Coding.DeserializeJson(ref reader, options);
current.Coding.Add(v_Coding);
if (!reader.Read())
{
throw new JsonException($"CodeableConcept error reading 'coding' array, read failed! depth: {reader.CurrentDepth}, pos: {reader.BytesConsumed}");
}
if (reader.TokenType == JsonTokenType.EndObject)
{
reader.Read();
}
}
if (current.Coding.Count == 0)
{
current.Coding = null;
}
break;
case "text":
if (reader.TokenType == JsonTokenType.Null)
{
current.TextElement = new FhirString();
reader.Skip();
}
else
{
current.TextElement = new FhirString(reader.GetString());
}
break;
case "_text":
if (current.TextElement == null)
{
current.TextElement = new FhirString();
}
((Hl7.Fhir.Model.Element)current.TextElement).DeserializeJson(ref reader, options);
break;
// Complex: CodeableConcept, Export: CodeableConcept, Base: Element
default:
((Hl7.Fhir.Model.Element)current).DeserializeJsonProperty(ref reader, options, propertyName);
break;
}
}
public DiagnosticReport CreateDiagnosticReport()
{
Hl7.Fhir.Model.Coding coding = new Hl7.Fhir.Model.Coding
{
System = "http://loinc.org",
Code = "51990-0",
Display = "Basic Metabolic Panel"
};
List <Hl7.Fhir.Model.Coding> CodingList = new List <Hl7.Fhir.Model.Coding>
{
coding
};
var code = new CodeableConcept
{
Coding = CodingList
};
ResourceReference reff = new ResourceReference
{
Reference = "Patient/099e7de7-c952-40e2-9b4e-0face78c9d80"
};
DiagnosticReport dr = new DiagnosticReport
{
Code = code,
Status = DiagnosticReport.DiagnosticReportStatus.Final,
Subject = reff,
};
//dr.ResourceType = "DiagnosticReport";
return(dr);
}
/// <summary>
/// Parse Coding
/// </summary>
public static Hl7.Fhir.Model.Coding ParseCoding(IFhirReader reader, ErrorList errors, Hl7.Fhir.Model.Coding existingInstance = null)
{
Hl7.Fhir.Model.Coding result = existingInstance != null ? existingInstance : new Hl7.Fhir.Model.Coding();
string currentElementName = reader.CurrentElementName;
reader.EnterElement();
while (reader.HasMoreElements())
{
var atName = reader.CurrentElementName;
// Parse element extension
if (atName == "extension")
{
result.Extension = new List <Hl7.Fhir.Model.Extension>();
reader.EnterArray();
while (ParserUtils.IsAtArrayElement(reader, "extension"))
{
result.Extension.Add(ExtensionParser.ParseExtension(reader, errors));
}
reader.LeaveArray();
}
// Parse element _id
else if (atName == "_id")
{
result.LocalIdElement = Id.Parse(reader.ReadPrimitiveContents(typeof(Id)));
}
// Parse element system
else if (atName == "system")
{
result.SystemElement = FhirUriParser.ParseFhirUri(reader, errors);
}
// Parse element code
else if (atName == "code")
{
result.CodeElement = CodeParser.ParseCode(reader, errors);
}
// Parse element display
else if (atName == "display")
{
result.DisplayElement = FhirStringParser.ParseFhirString(reader, errors);
}
else
{
errors.Add(String.Format("Encountered unknown element {0} while parsing {1}", reader.CurrentElementName, currentElementName), reader);
reader.SkipSubElementsFor(currentElementName);
result = null;
}
}
reader.LeaveElement();
return(result);
}
public void InvokeLookupCoding()
{
var client = new FhirClient(testEndpoint);
var coding = new Coding("http://hl7.org/fhir/administrative-gender", "male");
var expansion = client.ConceptLookup(coding);
// Assert.AreEqual("AdministrativeGender", expansion.GetSingleValue<FhirString>("name").Value); // Returns empty currently on Grahame's server
Assert.AreEqual("Male", expansion.GetSingleValue<FhirString>("display").Value);
}
public static void SerializeCoding(Hl7.Fhir.Model.Coding value, IFhirWriter writer, bool summary)
{
writer.WriteStartComplexContent();
// Serialize element _id
if (value.LocalIdElement != null)
{
writer.WritePrimitiveContents("_id", value.LocalIdElement, XmlSerializationHint.Attribute);
}
// Serialize element extension
if (value.Extension != null && !summary && value.Extension.Count > 0)
{
writer.WriteStartArrayElement("extension");
foreach (var item in value.Extension)
{
writer.WriteStartArrayMember("extension");
ExtensionSerializer.SerializeExtension(item, writer, summary);
writer.WriteEndArrayMember();
}
writer.WriteEndArrayElement();
}
// Serialize element system
if (value.SystemElement != null)
{
writer.WriteStartElement("system");
FhirUriSerializer.SerializeFhirUri(value.SystemElement, writer, summary);
writer.WriteEndElement();
}
// Serialize element code
if (value.CodeElement != null)
{
writer.WriteStartElement("code");
CodeSerializer.SerializeCode(value.CodeElement, writer, summary);
writer.WriteEndElement();
}
// Serialize element display
if (value.DisplayElement != null)
{
writer.WriteStartElement("display");
FhirStringSerializer.SerializeFhirString(value.DisplayElement, writer, summary);
writer.WriteEndElement();
}
writer.WriteEndComplexContent();
}
public void RenderCoding()
{
var c = new Coding("http://www.loinc.org/", "23456-5");
Assert.AreEqual("23456-5@http://www.loinc.org/", c.ForDisplay());
c.Display = "Testing rendering";
Assert.AreEqual("23456-5@http://www.loinc.org/ (Testing rendering)", c.ForDisplay());
var c2 = new Coding("http://www.loinc.org/", "12345-6");
var cc = new CodeableConcept();
cc.Coding = new List<Coding>() { c,c2 };
Assert.AreEqual("{23456-5@http://www.loinc.org/ (Testing rendering), 12345-6@http://www.loinc.org/}", cc.ForDisplay());
cc.Text = "Unit test rendering";
Assert.AreEqual("Unit test rendering {23456-5@http://www.loinc.org/ (Testing rendering), 12345-6@http://www.loinc.org/}", cc.ForDisplay());
}
public void TestIsNullOrEmpty_Coding()
{
var coding = new Coding();
Assert.IsTrue(coding.IsNullOrEmpty());
var uri = new FhirUri();
Assert.IsTrue(uri.IsNullOrEmpty());
coding.SystemElement = uri;
Assert.IsTrue(coding.IsNullOrEmpty());
uri.Value = "http://example.org/";
Assert.IsFalse(uri.IsNullOrEmpty());
Assert.IsFalse(coding.IsNullOrEmpty());
Assert.IsFalse((coding as Base).IsNullOrEmpty());
uri.Value = null;
Assert.IsTrue(uri.IsNullOrEmpty());
Assert.IsTrue(coding.IsNullOrEmpty());
var extension = new Extension();
Assert.IsTrue(extension.IsNullOrEmpty());
coding.Extension.Add(extension);
Assert.IsTrue(coding.IsNullOrEmpty());
var extensionValue = new Coding(null, "test");
Assert.IsFalse(extensionValue.IsNullOrEmpty());
extension.Value = extensionValue;
Assert.IsFalse(extension.IsNullOrEmpty());
Assert.IsFalse(coding.IsNullOrEmpty());
Assert.IsFalse((coding as Base).IsNullOrEmpty());
extensionValue.Code = null;
Assert.IsTrue(extensionValue.IsNullOrEmpty());
Assert.IsTrue(extension.IsNullOrEmpty());
Assert.IsTrue(coding.IsNullOrEmpty());
coding.Extension.Clear();
Assert.IsTrue(coding.IsNullOrEmpty());
}
public override IDeepCopyable CopyTo(IDeepCopyable other)
{
var dest = other as CodeableConcept;
if (dest == null)
{
throw new ArgumentException("Can only copy to an object of the same type", "other");
}
base.CopyTo(dest);
if (Coding != null)
{
dest.Coding = new List <Hl7.Fhir.Model.Coding>(Coding.DeepCopy());
}
if (TextElement != null)
{
dest.TextElement = (Hl7.Fhir.Model.FhirString)TextElement.DeepCopy();
}
return(dest);
}
public override ErrorList Validate()
{
var result = new ErrorList();
result.AddRange(base.Validate());
if (Coding != null)
{
Coding.ForEach(elem => result.AddRange(elem.Validate()));
}
if (TextElement != null)
{
result.AddRange(TextElement.Validate());
}
if (PrimaryElement != null)
{
result.AddRange(PrimaryElement.Validate());
}
return(result);
}
public void TestIsNullOrEmpty_List()
{
var codings = new List <Coding>();
Assert.IsTrue(codings.IsNullOrEmpty());
var coding = new Coding();
Assert.IsTrue(coding.IsNullOrEmpty());
codings.Add(coding);
Assert.IsFalse(codings.IsNullOrEmpty()); // Empty values are counted... (but shouldn't occur)
// Assert.IsTrue(codings.IsNullOrEmpty());
coding.Code = "test";
Assert.IsFalse(coding.IsNullOrEmpty());
Assert.IsFalse(codings.IsNullOrEmpty());
coding.Code = string.Empty;
Assert.IsTrue(coding.IsNullOrEmpty());
Assert.IsFalse(codings.IsNullOrEmpty()); // Empty values are counted... (but shouldn't occur)
// Assert.IsTrue(codings.IsNullOrEmpty());
}
/// <summary>
/// { system : system1, code: code1, text: display1 },
/// </summary>
/// <param name="element"></param>
/// <returns></returns>
private List <Expression> ToExpressions(FhirModel.Coding element)
{
if (element == null)
{
return(null);
}
var values = new List <IndexValue>();
if (element.Code != null)
{
values.Add(new IndexValue("code", new StringValue(element.Code)));
}
if (element.System != null)
{
values.Add(new IndexValue("system", new StringValue(element.System)));
}
if (element.Display != null)
{
values.Add(new IndexValue("text", new StringValue(element.Display)));
}
return(ListOf(new CompositeValue(values)));
}
/// <summary>
/// Deserialize JSON into a FHIR Meta
/// </summary>
public static void DeserializeJsonProperty(this Meta current, ref Utf8JsonReader reader, JsonSerializerOptions options, string propertyName)
{
switch (propertyName)
{
case "versionId":
if (reader.TokenType == JsonTokenType.Null)
{
current.VersionIdElement = new Id();
reader.Skip();
}
else
{
current.VersionIdElement = new Id(reader.GetString());
}
break;
case "_versionId":
if (current.VersionIdElement == null)
{
current.VersionIdElement = new Id();
}
((Hl7.Fhir.Model.Element)current.VersionIdElement).DeserializeJson(ref reader, options);
break;
case "lastUpdated":
if (reader.TokenType == JsonTokenType.Null)
{
current.LastUpdatedElement = new Instant();
reader.Skip();
}
else
{
current.LastUpdatedElement = new Instant(DateTimeOffset.Parse(reader.GetString()));
}
break;
case "_lastUpdated":
if (current.LastUpdatedElement == null)
{
current.LastUpdatedElement = new Instant();
}
((Hl7.Fhir.Model.Element)current.LastUpdatedElement).DeserializeJson(ref reader, options);
break;
case "source":
if (reader.TokenType == JsonTokenType.Null)
{
current.SourceElement = new FhirUri();
reader.Skip();
}
else
{
current.SourceElement = new FhirUri(reader.GetString());
}
break;
case "_source":
if (current.SourceElement == null)
{
current.SourceElement = new FhirUri();
}
((Hl7.Fhir.Model.Element)current.SourceElement).DeserializeJson(ref reader, options);
break;
case "profile":
if ((reader.TokenType != JsonTokenType.StartArray) || (!reader.Read()))
{
throw new JsonException($"Meta error reading 'profile' expected StartArray, found {reader.TokenType}! depth: {reader.CurrentDepth}, pos: {reader.BytesConsumed}");
}
current.ProfileElement = new List <FhirUri>();
while (reader.TokenType != JsonTokenType.EndArray)
{
if (reader.TokenType == JsonTokenType.Null)
{
current.ProfileElement.Add(new FhirUri());
reader.Skip();
}
else
{
current.ProfileElement.Add(new FhirUri(reader.GetString()));
}
if (!reader.Read())
{
throw new JsonException($"Meta error reading 'profile' array, read failed! depth: {reader.CurrentDepth}, pos: {reader.BytesConsumed}");
}
if (reader.TokenType == JsonTokenType.EndObject)
{
reader.Read();
}
}
if (current.ProfileElement.Count == 0)
{
current.ProfileElement = null;
}
break;
case "_profile":
if ((reader.TokenType != JsonTokenType.StartArray) || (!reader.Read()))
{
throw new JsonException($"Meta error reading 'profile' expected StartArray, found {reader.TokenType}! depth: {reader.CurrentDepth}, pos: {reader.BytesConsumed}");
}
int i_profile = 0;
while (reader.TokenType != JsonTokenType.EndArray)
{
if (i_profile >= current.ProfileElement.Count)
{
current.ProfileElement.Add(new FhirUri());
}
if (reader.TokenType == JsonTokenType.Null)
{
reader.Skip();
}
else
{
((Hl7.Fhir.Model.Element)current.ProfileElement[i_profile++]).DeserializeJson(ref reader, options);
}
if (!reader.Read())
{
throw new JsonException($"Meta error reading 'profile' array, read failed! depth: {reader.CurrentDepth}, pos: {reader.BytesConsumed}");
}
if (reader.TokenType == JsonTokenType.EndObject)
{
reader.Read();
}
}
break;
case "security":
if ((reader.TokenType != JsonTokenType.StartArray) || (!reader.Read()))
{
throw new JsonException($"Meta error reading 'security' expected StartArray, found {reader.TokenType}! depth: {reader.CurrentDepth}, pos: {reader.BytesConsumed}");
}
current.Security = new List <Coding>();
while (reader.TokenType != JsonTokenType.EndArray)
{
Hl7.Fhir.Model.Coding v_Security = new Hl7.Fhir.Model.Coding();
v_Security.DeserializeJson(ref reader, options);
current.Security.Add(v_Security);
if (!reader.Read())
{
throw new JsonException($"Meta error reading 'security' array, read failed! depth: {reader.CurrentDepth}, pos: {reader.BytesConsumed}");
}
if (reader.TokenType == JsonTokenType.EndObject)
{
reader.Read();
}
}
if (current.Security.Count == 0)
{
current.Security = null;
}
break;
case "tag":
if ((reader.TokenType != JsonTokenType.StartArray) || (!reader.Read()))
{
throw new JsonException($"Meta error reading 'tag' expected StartArray, found {reader.TokenType}! depth: {reader.CurrentDepth}, pos: {reader.BytesConsumed}");
}
current.Tag = new List <Coding>();
while (reader.TokenType != JsonTokenType.EndArray)
{
Hl7.Fhir.Model.Coding v_Tag = new Hl7.Fhir.Model.Coding();
v_Tag.DeserializeJson(ref reader, options);
current.Tag.Add(v_Tag);
if (!reader.Read())
{
throw new JsonException($"Meta error reading 'tag' array, read failed! depth: {reader.CurrentDepth}, pos: {reader.BytesConsumed}");
}
if (reader.TokenType == JsonTokenType.EndObject)
{
reader.Read();
}
}
if (current.Tag.Count == 0)
{
current.Tag = null;
}
break;
// Complex: Meta, Export: Meta, Base: Element
default:
((Hl7.Fhir.Model.Element)current).DeserializeJsonProperty(ref reader, options, propertyName);
break;
}
}
//public static List<Tag> GetFhirTags(this HttpHeaders headers)
//{
// IEnumerable<string> tagstrings;
// List<Tag> tags = new List<Tag>();
// if (headers.TryGetValues(FhirHeader.CATEGORY, out tagstrings))
// {
// foreach (string tagstring in tagstrings)
// {
// tags.AddRange(HttpUtil.ParseCategoryHeader(tagstring));
// }
// }
// return tags;
//}
//public static void SetFhirTags(this HttpHeaders headers, IEnumerable<Tag> tags)
//{
// string tagstring = HttpUtil.BuildCategoryHeader(tags);
// headers.Add(FhirHeader.CATEGORY, tagstring);
//}
public static bool EqualTag(Coding coding, Coding other)
{
return (coding.System == other.System);
}
/// <summary>
/// Deserialize JSON into a FHIR DataRequirement#CodeFilter
/// </summary>
public static void DeserializeJsonProperty(this DataRequirement.CodeFilterComponent current, ref Utf8JsonReader reader, JsonSerializerOptions options, string propertyName)
{
switch (propertyName)
{
case "path":
if (reader.TokenType == JsonTokenType.Null)
{
current.PathElement = new FhirString();
reader.Skip();
}
else
{
current.PathElement = new FhirString(reader.GetString());
}
break;
case "_path":
if (current.PathElement == null)
{
current.PathElement = new FhirString();
}
((Hl7.Fhir.Model.Element)current.PathElement).DeserializeJson(ref reader, options);
break;
case "searchParam":
if (reader.TokenType == JsonTokenType.Null)
{
current.SearchParamElement = new FhirString();
reader.Skip();
}
else
{
current.SearchParamElement = new FhirString(reader.GetString());
}
break;
case "_searchParam":
if (current.SearchParamElement == null)
{
current.SearchParamElement = new FhirString();
}
((Hl7.Fhir.Model.Element)current.SearchParamElement).DeserializeJson(ref reader, options);
break;
case "valueSet":
if (reader.TokenType == JsonTokenType.Null)
{
current.ValueSetElement = new Canonical();
reader.Skip();
}
else
{
current.ValueSetElement = new Canonical(reader.GetString());
}
break;
case "_valueSet":
if (current.ValueSetElement == null)
{
current.ValueSetElement = new Canonical();
}
((Hl7.Fhir.Model.Element)current.ValueSetElement).DeserializeJson(ref reader, options);
break;
case "code":
if ((reader.TokenType != JsonTokenType.StartArray) || (!reader.Read()))
{
throw new JsonException($"CodeFilterComponent error reading 'code' expected StartArray, found {reader.TokenType}! depth: {reader.CurrentDepth}, pos: {reader.BytesConsumed}");
}
current.Code = new List <Coding>();
while (reader.TokenType != JsonTokenType.EndArray)
{
Hl7.Fhir.Model.Coding v_Code = new Hl7.Fhir.Model.Coding();
v_Code.DeserializeJson(ref reader, options);
current.Code.Add(v_Code);
if (!reader.Read())
{
throw new JsonException($"CodeFilterComponent error reading 'code' array, read failed! depth: {reader.CurrentDepth}, pos: {reader.BytesConsumed}");
}
if (reader.TokenType == JsonTokenType.EndObject)
{
reader.Read();
}
}
if (current.Code.Count == 0)
{
current.Code = null;
}
break;
// Complex: codeFilter, Export: CodeFilterComponent, Base: Element
default:
((Hl7.Fhir.Model.Element)current).DeserializeJsonProperty(ref reader, options, propertyName);
break;
}
}
public void Write(Definition definition, Coding coding)
{
string system = (coding.System != null) ? coding.System.ToString() : null;
string code = ((coding.Code != null) && (coding.Code != null)) ? coding.Code : null;
BsonDocument value = new BsonDocument()
{
{ "system", system, system != null },
{ "code", code },
{ "display", coding.Display, coding.Display != null }
};
document.Write(definition.ParamName, value);
}
public void Write(Definition definition, Enum item)
{
var coding = new Coding();
coding.Code = getEnumLiteral(item);
Write(definition, coding);
}
/// <summary>
/// Filter all ResourceEntries that have a given tag.
/// </summary>
/// <typeparam name="T">Type of Resource to filter</typeparam>
/// <param name="entries">List of resources to filter on</param>
/// <param name="tag">Tag to filter Resources on</param>
/// <returns>A list of typed ResourceEntries having the given tag, or an empty list if none were found.</returns>
public static IEnumerable <T> ByTag <T>(this IEnumerable <Resource> entries, Coding tag) where T : Resource, new()
{
return(entries.Where(be => be.Meta != null && be.Meta.Tag != null && be.Meta.Tag.Contains(tag) && be is T).Cast <T>());
}
/// <summary>
/// Filter all BundleEntries that have a given tag.
/// </summary>
/// <param name="entries">List of bundle entries to filter on</param>
/// <param name="tag">Tag to filter Resources on</param>
/// <returns>A list of BundleEntries having the given tag, or an empty list if none were found.</returns>
public static IEnumerable <Resource> ByTag(this IEnumerable <Resource> entries, Coding tag)
{
return(entries.Where(be => be.Meta != null && be.Meta.Tag != null && be.Meta.Tag.Contains(tag)));
}
public static bool HasTag(this IEnumerable<Coding> tags, Coding tag)
{
return tags.Any(t => EqualTag(t, tag));
}
public void Collect(Definition definition, Enum item)
{
var coding = new Coding();
coding.Code = getEnumLiteral(item);
Collect(definition, coding);
}
private void button1_Click_2(object sender, EventArgs e)
{
var endpoint = new Uri("http://fhirtest.uhn.ca/baseDstu2");
var client = new FhirClient(endpoint);
// Create new value for observation
SampledData val = new SampledData();
CodeableConcept concept = new CodeableConcept();
concept.Coding = new List<Coding>();
if (conversionList.Text.Equals("age"))
{
val.Data = CurrentMeasurement.age.ToString();
Coding code = new Coding();
code.Code = "410668003";
concept.Coding.Add(code);
}
else if (conversionList.Text.Equals("bmr"))
{
val.Data = CurrentMeasurement.bmr.ToString();
Coding code = new Coding();
code.Code = "60621009";
concept.Coding.Add(code);
}
else if (conversionList.Text.Equals("height"))
{
val.Data = CurrentMeasurement.height.ToString();
Coding code = new Coding();
code.Code = "60621009"; //SNOMED CT code
concept.Coding.Add(code);
}
else if (conversionList.Text.Equals("m_active_time")) val.Data = CurrentMeasurement.m_active_time.ToString();
else if (conversionList.Text.Equals("m_calories")) val.Data = CurrentMeasurement.m_calories.ToString();
else if (conversionList.Text.Equals("m_distance")) val.Data = CurrentMeasurement.m_distance.ToString();
else if (conversionList.Text.Equals("m_inactive_time")) val.Data = CurrentMeasurement.m_inactive_time.ToString();
else if (conversionList.Text.Equals("m_lcat")) val.Data = CurrentMeasurement.m_lcat.ToString();
else if (conversionList.Text.Equals("m_lcit")) val.Data = CurrentMeasurement.m_lcit.ToString();
else if (conversionList.Text.Equals("m_steps")) val.Data = CurrentMeasurement.m_steps.ToString();
else if (conversionList.Text.Equals("m_total_calories")) val.Data = CurrentMeasurement.m_total_calories.ToString();
else if (conversionList.Text.Equals("s_asleep_time")) val.Data = CurrentMeasurement.s_asleep_time.ToString();
else if (conversionList.Text.Equals("s_awake")) val.Data = CurrentMeasurement.s_awake.ToString();
else if (conversionList.Text.Equals("s_awake_time")) val.Data = CurrentMeasurement.s_awake_time.ToString();
else if (conversionList.Text.Equals("s_awakenings")) val.Data = CurrentMeasurement.s_awakenings.ToString();
else if (conversionList.Text.Equals("s_bedtime")) val.Data = CurrentMeasurement.s_bedtime.ToString();
else if (conversionList.Text.Equals("s_clinical_deep")) val.Data = CurrentMeasurement.s_clinical_deep.ToString();
else if (conversionList.Text.Equals("s_count")) val.Data = CurrentMeasurement.s_count.ToString();
else if (conversionList.Text.Equals("s_duration")) val.Data = CurrentMeasurement.s_duration.ToString();
else if (conversionList.Text.Equals("s_light")) val.Data = CurrentMeasurement.s_light.ToString();
else if (conversionList.Text.Equals("s_quality")) val.Data = CurrentMeasurement.s_quality.ToString();
else if (conversionList.Text.Equals("s_rem")) val.Data = CurrentMeasurement.s_rem.ToString();
else if (conversionList.Text.Equals("weight")) val.Data = CurrentMeasurement.weight.ToString();
else val.Data = "E"; // Error
Console.WriteLine("Value data: " + val.Data);
ResourceReference dev = new ResourceReference();
dev.Reference = "Device/" + CurrentDevice.Id;
ResourceReference pat = new ResourceReference();
pat.Reference = "Patient/" + CurrentPatient.Id;
Console.WriteLine("Patient reference: " + pat.Reference);
Console.WriteLine("Conversion: " + conversionList.Text);
CodeableConcept naam = new CodeableConcept();
naam.Text = conversionList.Text;
DateTime date = DateTime.ParseExact(CurrentMeasurement.date, "yyyymmdd", null);
Console.WriteLine("" + date.ToString());
var obs = new Observation() {Device = dev, Subject = pat, Value = val, Issued = date, Code = naam, Category = concept, Status = Observation.ObservationStatus.Final};
client.Create(obs);
conversionStatus.Text = "Done!";
}
public void CodeableConceptMapTest()
{
var input = new CodeableConcept();
input.Text = "bla text";
input.Coding = new List<Coding>();
var coding1 = new Coding();
coding1.CodeElement = new Code("bla");
coding1.SystemElement = new FhirUri("http://bla.com");
coding1.DisplayElement = new FhirString("bla display");
var coding2 = new Coding();
coding2.CodeElement = new Code("flit");
coding2.SystemElement = new FhirUri("http://flit.com");
coding2.DisplayElement = new FhirString("flit display");
input.Coding.Add(coding1);
input.Coding.Add(coding2);
var result = sut.Map(input);
Assert.AreEqual(2, result.Count()); //1 with text and 1 with the codings below it
//Check wether CodeableConcept.Text is in the result.
var textIVs = result.Where(c => c.GetType() == typeof(IndexValue) && (c as IndexValue).Name == "text").ToList();
Assert.AreEqual(1, textIVs.Count());
var textIV = (IndexValue)textIVs.FirstOrDefault();
Assert.IsNotNull(textIV);
Assert.AreEqual(1, textIV.Values.Count());
Assert.IsInstanceOfType(textIV.Values[0], typeof(StringValue));
Assert.AreEqual("bla text", (textIV.Values[0] as StringValue).Value);
//Check wether both codings are in the result.
var codingIVs = result.Where(c => c.GetType() == typeof(IndexValue) && (c as IndexValue).Name == "coding").ToList();
Assert.AreEqual(1, codingIVs.Count());
var codingIV = (IndexValue)codingIVs.First();
var codeIVs = codingIV.Values.Where(c => c.GetType() == typeof(CompositeValue)).ToList();
Assert.AreEqual(2, codeIVs.Count());
var codeIV1 = (CompositeValue)codeIVs[0];
var codeIV2 = (CompositeValue)codeIVs[1];
if (((codeIV1.Components[0] as IndexValue).Values[0] as StringValue).Value == "bla")
{
CheckCoding(codeIV1, "bla", "http://bla.com", "bla display");
CheckCoding(codeIV2, "flit", "http://flit.com", "flit display");
}
else //apparently the codings are in different order in the result.
{
CheckCoding(codeIV2, "bla", "http://bla.com", "bla display");
CheckCoding(codeIV1, "flit", "http://flit.com", "flit display");
}
}
public void CodingMapTest()
{
var input = new Coding();
input.CodeElement = new Code("bla");
input.SystemElement = new FhirUri("http://bla.com");
input.DisplayElement = new FhirString("bla display");
var result = sut.Map(input);
Assert.AreEqual(1, result.Count());
Assert.IsInstanceOfType(result[0], typeof(CompositeValue));
var comp = result[0] as CompositeValue;
CheckCoding(comp, "bla", "http://bla.com", "bla display");
}
internal static Practitioner CreatePractitionerResource()
{
// Create new Practitioner resource
Practitioner res = new Practitioner();
// Allocate the logical resource Id - this is what the resource is referenced by
res.Id = "41fe704c-18e5-11e5-b60b-1697f925ec7b";
// Add the profile for this resource (from the FGM DMS)
Meta metadata = new Meta();
metadata.Profile = new string[] { "urn:fhir.nhs.uk:profile/NHS-FGM-Practitioner" };
res.Meta = metadata;
// Add the business idetifier for the SDS User Id
res.Identifier = new List<Identifier>();
Identifier id1 = new Identifier("urn:fhir.nhs.uk/id/SDSUserID", "G12345678");
id1.Use = Identifier.IdentifierUse.Official;
res.Identifier.Add(id1);
// Add the business idetifier for the SDS Role Profile Id
Identifier id2 = new Identifier("urn:fhir.nhs.uk/id/SDSRoleProfileID", "PT1234");
id2.Use = Identifier.IdentifierUse.Official;
res.Identifier.Add(id2);
// Add the name of the practitioner
res.Name = HumanName.ForFamily("Wood").WithGiven("Town");
res.Name.Use = HumanName.NameUse.Official;
res.Name.Prefix = new String[] { "Dr." };
// Add details about the practitioner's role
Practitioner.PractitionerPractitionerRoleComponent pr = new Practitioner.PractitionerPractitionerRoleComponent();
Coding code = new Coding("urn:fhir.nhs.uk:vs/SDSJobRoleName", "R0090");
code.Display = "Hospital Practitioner";
pr.Role = new CodeableConcept();
pr.Role.Coding = new List<Coding>();
pr.Role.Coding.Add(code);
// Add details about the practitioner's managing organisation
pr.ManagingOrganization =
new ResourceReference()
{ Reference = "Organization/41fe704c-18e5-11e5-b60b-1697f925ec7b" };
res.PractitionerRole.Add(pr);
return res;
}
public FhirModel.Task GetResource()
{
var LastUpdated = new DateTimeOffset(2018, 07, 27, 16, 37, 00, new TimeSpan(8, 0, 0));
var Resource = new FhirModel.Task();
Resource.Id = GetResourceId();
IPyroFhirServerCodeSystem.SetProtectedMetaTag(Resource);
Resource.Meta.LastUpdated = MasterLastUpdated;
Resource.Identifier = new List <FhirModel.Identifier>()
{
IPyroFhirServerCodeSystem.GetIdentifier(PyroHealthFhirResource.CodeSystems.PyroFhirServer.Codes.ServerStartupTask)
};
//Task.Definition =??
Resource.Status = FhirModel.Task.TaskStatus.Ready;
Resource.Intent = FhirModel.RequestIntent.Order;
Resource.Priority = FhirModel.RequestPriority.Asap;
Resource.Code = new FhirModel.CodeableConcept();
FhirModel.Coding LoadFhirSpecResourcesTaskCoding = new FhirModel.Coding(IPyroTask.GetSystem(), IPyroTask.GetCode(CodeSystems.PyroTask.Codes.LoadFhirDefinitionResources));
Resource.Code.Coding.Add(LoadFhirSpecResourcesTaskCoding);
Resource.Description = "This task is used by the Pyro FHIR Server to load all the FHIR specification definition resource into the FHIR server instance on the first ever startup.";
Resource.Focus = new FhirModel.ResourceReference($"{FhirModel.ResourceType.Device.GetLiteral()}/{IPyroFhirServerDevice.GetResourceId()}");
FhirModel.ResourceReference ServerManagingOrginationReferrence;
FhirModel.ResourceReference PyroHealthOrgReference = new FhirModel.ResourceReference($"{FhirModel.ResourceType.Organization.GetLiteral()}/{IPyroHealthOrg.GetResourceId()}");
if (string.IsNullOrWhiteSpace(IGlobalProperties.ThisServersManagingOrganizationResource))
{
ServerManagingOrginationReferrence = PyroHealthOrgReference;
}
else
{
ServerManagingOrginationReferrence = new FhirModel.ResourceReference(IGlobalProperties.ThisServersManagingOrganizationResource);
}
Resource.For = ServerManagingOrginationReferrence;
Resource.AuthoredOn = new FhirModel.FhirDateTime(LastUpdated).ToString();
Resource.LastModified = new FhirModel.FhirDateTime(LastUpdated).ToString();
Resource.Requester = new FhirModel.Task.RequesterComponent();
Resource.Requester.OnBehalfOf = ServerManagingOrginationReferrence;
Resource.Requester.Agent = PyroHealthOrgReference;
Resource.PerformerType = new List <FhirModel.CodeableConcept>();
var PerformerTypeCodeableConcept = new FhirModel.CodeableConcept();
Resource.PerformerType.Add(PerformerTypeCodeableConcept);
PerformerTypeCodeableConcept.Coding = new List <FhirModel.Coding>();
var PerformerTypeCoding = new FhirModel.Coding();
PerformerTypeCodeableConcept.Coding.Add(PerformerTypeCoding);
PerformerTypeCoding.System = "http://hl7.org/fhir/task-performer-type";
PerformerTypeCoding.Code = "scheduler";
PerformerTypeCoding.Display = "Scheduler";
Resource.Owner = PyroHealthOrgReference;
Resource.Reason = new FhirModel.CodeableConcept()
{
Text = "To Load the FHIR Specification base resources into the FHIR server instance"
};
Resource.Restriction = new FhirModel.Task.RestrictionComponent()
{
Repetitions = 0
};
return(Resource);
}
public S.Concept ToSystemConcept()
{
var codes = Coding.Select(c => c.ToSystemCode());
return(new S.Concept(codes, display: Text));
}
