private void fillMatrix()
{
int alignLen = int.Parse(bandlengthBox.Text);
ResultTable.Result result;
PairWiseAlign processor = new PairWiseAlign(alignLen);
for (int x = 0; x < NUMBER_OF_SEQUENCES; ++x)
{
for (int y = x; y < NUMBER_OF_SEQUENCES; ++y)
{
// if the two sequences are the same, fill that cell with -3*length because they match
if (x == y)
{
result = new ResultTable.Result();
PairWiseAlign align = new PairWiseAlign();
int lengthOfSequenceA = Math.Min(m_sequences[x].Sequence.Length, align.getMaxhCharactersToAlign());
int score = -3 * lengthOfSequenceA;
string alignment = m_sequences[x].Sequence.Substring(0, lengthOfSequenceA);
result.Update(score, alignment, alignment);
}
else
{
result = processor.Align_And_Extract(m_sequences[x], m_sequences[y], bandCheckBox.Checked); // ********* hook to the student's code
}
m_resultTable.AddResult(x, y, result);
m_resultTable.DisplayResult(x, y);
}
}
}
private void fillMatrix()
{
int alignLen = int.Parse(bandlengthBox.Text);
ResultTable.Result result;
PairWiseAlign processor = new PairWiseAlign(alignLen);
for (int x = 0; x < NUMBER_OF_SEQUENCES; ++x)
{
for (int y = x; y < NUMBER_OF_SEQUENCES; ++y)
{
result = processor.Align_And_Extract(m_sequences[x], m_sequences[y], bandCheckBox.Checked); // ********* hook to the student's code
m_resultTable.AddResult(x, y, result);
m_resultTable.DisplayResult(x, y);
}
}
}
private void fillMatrix()
{
int alignLen = int.Parse(bandlengthBox.Text);
ResultTable.Result result;
PairWiseAlign processor = new PairWiseAlign(alignLen);
for (int x = 0; x < NUMBER_OF_SEQUENCES; ++x)
{
for (int y = x; y < NUMBER_OF_SEQUENCES; ++y)
{
result = processor.Align_And_Extract(new Tuple<int,int>(x,y),m_sequences[x], m_sequences[y], bandCheckBox.Checked); // ********* hook to the student's code
m_resultTable.AddResult(x,y,result);
m_resultTable.DisplayResult(x, y);
}
}
}
private void fillMatrix()
{
int alignLen = int.Parse(bandlengthBox.Text);
ResultTable.Result result;
PairWiseAlign processor = new PairWiseAlign(alignLen);
for (int x = 0; x < NUMBER_OF_SEQUENCES; ++x)
{
for (int y = x; y < NUMBER_OF_SEQUENCES; ++y)
{
// if the two sequences are the same, fill that cell with -3*length because they match
if (x == y)
{
result = new ResultTable.Result();
PairWiseAlign align = new PairWiseAlign();
int lengthOfSequenceA = Math.Min(m_sequences[x].Sequence.Length, align.getMaxhCharactersToAlign());
int score = -3 * lengthOfSequenceA;
string alignment = m_sequences[x].Sequence.Substring(0, lengthOfSequenceA);
result.Update(score, alignment, alignment);
}
else
{
result = processor.Align_And_Extract(m_sequences[x], m_sequences[y], bandCheckBox.Checked); // ********* hook to the student's code
}
m_resultTable.AddResult(x,y,result);
m_resultTable.DisplayResult(x, y);
}
}
}
