public TermScoreCalculator(ref GOTerms gt, ref ResultParser rp)
{
this.gt = gt;
resultParser = rp;
//Find root term for the 3 GO namespaces
//Molecular function, Celular Component, Biological Process
List <string> topMostNodesIDs = gt.findTopMostNodes();
foreach (string s in topMostNodesIDs)
{
Term termToAdd = gt.getTermByID(s);
topMostNodes.Add(termToAdd);
}
BuildResultsInPopulationCache();
}
private void addRoots()
{
treeViewGO2.CollapseAll();
treeViewGO2.Nodes.Clear();
frontLine.Clear();
List <string> rootNames = gt.findTopMostNodes();
foreach (TreeNode tn in treeNodes)
{
if (rootNames.Contains(tn.Name))
{
if (!treeViewGO2.Nodes.Contains(tn))
{
treeViewGO2.Nodes.Add(cleanNode(tn));
frontLine.Add(tn.FullPath);
}
}
}
}
