public static Mutation getMutationByDetails(string chrom, int position, char varNuc, char refNuc)
{
Mutation toReturn = null;
try
{
List<String> mutationDetails = LocalDbDAL.getMutationByDetails(chrom, position, refNuc, varNuc);
if (mutationDetails != null)
{
string mutId = mutationDetails.ElementAt(0);
string tempChrom = mutationDetails.ElementAt(1);
int tempPosition = Convert.ToInt32(mutationDetails.ElementAt(2));
string tempGeneName = mutationDetails.ElementAt(3);
char tempRefNuc = Convert.ToChar(mutationDetails.ElementAt(4));
char tempVarNuc = Convert.ToChar(mutationDetails.ElementAt(5));
char tempStrand = Convert.ToChar(mutationDetails.ElementAt(6));
string tempChromNum = mutationDetails.ElementAt(7);
string tempRefCodon = mutationDetails.ElementAt(8);
string tempVarCodon = mutationDetails.ElementAt(9);
string tempRefAA = mutationDetails.ElementAt(10);
string tempVarAA = mutationDetails.ElementAt(11);
string tempPMutationName = mutationDetails.ElementAt(12);
string tempCMutationName = mutationDetails.ElementAt(13);
string tempCosmicName = mutationDetails.ElementAt(14);
toReturn = new Mutation(mutId, tempChrom, tempPosition, tempGeneName, tempRefNuc, tempVarNuc, tempStrand, tempChromNum, tempRefCodon, tempVarCodon, tempRefAA, tempVarAA, tempPMutationName, tempCMutationName, tempCosmicName);
}
}
catch (Exception)
{
throw;
}
return toReturn;
}
public static bool mutationExist(Mutation mutation)
{
try
{
return LocalDbDAL.mutationExist(mutation.Chrom, mutation.Position, mutation.Ref, mutation.Var);
}
catch (Exception)
{
throw;
}
}
public static void addMutation(Mutation m)
{
try
{
LocalDbDAL.addMutation(m.MutId, m.Chrom, m.Position, m.GeneName, m.Ref, m.Var, m.Strand, m.ChromNum, m.RefCodon, m.VarCodon, m.RefAA, m.VarAA, m.PMutationName, m.CMutationName, m.CosmicName);
}
catch (Exception)
{
throw;
}
}
