public Qs2000State GetState(TFileData query)
{
string testsFile = GlobalConfigVars.DbPath + "\\" + "Tests.qsd";
TestsFile test = ParseTestsFile(testsFile);
string tfile = GlobalConfigVars.DbPath + "\\" + GetTFile(query.SeqNum);
TFile tFile = ParseTFile(tfile);
string dfile = GlobalConfigVars.DbPath + "\\" + GetDFile(query.SeqNum);
DFile dFile = ParseDFile(dfile, tFile.Header.Identity.Name, tFile.Header.Identity.GelSize);
// 查找配置
TestProperties tp = test.Tests.Where(t => t.Identity.Equals(tFile.Header.Identity)).First();
int idx = query.Id - 1;
Qs2000State state = new Qs2000State
{
SeqNum = query.SeqNum.ToString(),
SampleNum = query.Id.ToString(),
SampleId = tFile.Datas[idx].Patient.Demographic[0],
ScannedDate = tFile.Datas[idx].ScanDate.ToString("yyyy/MM/dd HH:mm:ss"),
Scan = dFile.Scans[idx].DestBytes,
TestType = tFile.Header.Identity.Name
};
if (!tp.bIFE)
{
StdScan scan = dFile.Scans[idx] as StdScan;
state.Result = new Qs2000Result(scan.Data, scan.Fraction, tp.Fraction);
}
return(state);
}
public void Parse(string archFolder)
{
//string testsFile = GlobalConfigVars.DbPath + "\\" + "Tests.qsd";
// var test = ParseTestsFile(testsFile);
string indexFile = GlobalConfigVars.DbPath + "\\" + "Index.fsd";
var index = ParseIndexFile(indexFile);
if (index != null && index.Indexes != null)
{
foreach (IndexInfo item in index.Indexes)
{
string tfile = GlobalConfigVars.DbPath + "\\" + GetTFile(item.SeqNum);
TFile tFile = ParseTFile(tfile);
string dfile = GlobalConfigVars.DbPath + "\\" + GetDFile(item.SeqNum);
DFile dFile = ParseDFile(dfile, item.Name, item.GelSize);
}
}
}
public DFile ParseDFile(string file, string gelName, int gelSize)
{
int inc = 1;
DFile result = new DFile();
using (var fs = File.OpenRead(file))
{
using (var br = new BinaryReader(fs))
{
bool isIFE = gelName == "IFE";
result.Scans = new List <ScanCommon>();
for (int i = 0; i < gelSize; i++)
{
string name = ConvertToString(br.ReadBytes(8));
int gelSize1 = br.ReadInt16();
// 跳过ScanCommon信息解析
br.ReadBytes(842 - 10);
//scan.Patient;
//scan.Status
//scan.DateTimeStam;
//scan.SampleNumbe;
//scan.TestIdentit;
//scan.RunIdentity
//scan.Comments
//scan.Characteristic
//scan.ImageContras;
if (isIFE)
{
var scan = new IFEScan();
// 解析units
scan.Units = new List <float>();
for (int u = 0; u < 9 + 1; u++)
{
scan.Units.Add(br.ReadSingle());
}
//
scan.ImageAspectRatio = br.ReadSingle();
scan.Image = br.ReadBytes(50400); // 6 * 140 * 20 *3
List <Bitmap> parts = new List <Bitmap>();
List <string> bandNames = new List <string> {
"SP", "G", "A", "M", "K", "L"
};
for (int v = 0; v < 6; v++)
{
var temp = new byte[8400];
Array.Copy(scan.Image, v * 8400, temp, 0, 8400);
var part = BitmapImageHelper.CreateBitmap(140, 20, temp, true);
parts.Add(part);
}
var bitMap = BitmapImageHelper.FixImageMerge(parts, bandNames);
//var outFileName = "E:\\export\\" + ginc + "_" + inc++ + ".bmp";
//bitMap.Save(outFileName);
scan.DestBytes = BitmapImageHelper.GetBytes(bitMap);
result.Scans.Add(scan);
}
else
{
var scan = new StdScan();
// 解析ScanIdentifier
scan.Reference = new List <ScanIdentifier>();
for (int s = 0; s < 4; s++)
{
var reference = new ScanIdentifier();
reference.TimeStamp = br.ReadUInt32();
reference.SampleNumber = br.ReadByte();
reference.Instrument = ConvertToString(br.ReadBytes(11));
scan.Reference.Add(reference);
}
// skip
// br.ReadBytes(894);
scan.FractionIdentity = br.ReadUInt16();
// 解析data
scan.Data = new List <short>();
int dcount = br.ReadInt16();
var pos = 910 + i * 21150;
var pos1 = fs.Position;
for (int d = 0; d < dcount; d++)
{
scan.Data.Add(br.ReadInt16());
}
// skip
br.ReadBytes(2090 - (dcount + 1) * 2);
// 解析rawdata
scan.RawData = new List <ushort>();
int rdcount = br.ReadInt16();
int rdcount1 = rdcount * 3 / 4;
for (int r = 0; r < rdcount1; r++)
{
scan.RawData.Add(br.ReadUInt16());
}
// skip
br.ReadBytes(1568 - (rdcount1 + 1) * 2);
// 解析fraction
scan.Fraction = new List <short>();
for (int r = 0; r < 10 + 1; r++)
{
scan.Fraction.Add(br.ReadInt16());
}
// 解析rawfraction
scan.RawFraction = new List <short>();
for (int r = 0; r < 10 + 1; r++)
{
scan.RawFraction.Add(br.ReadInt16());
}
// union 1
br.ReadInt16();
// union 2
br.ReadBytes(20);
// todo：fix count
//scan.OverlayAdjust = new List<short>();
//for (int o = 0; o < 16; o++)
//{
// scan.OverlayAdjust.Add(br.ReadInt16());
//}
scan.Sensitivity = br.ReadInt16();
scan.Amplification = br.ReadSingle();
scan.DspScaleFactor = br.ReadSingle();
scan.NumScaleFactor = br.ReadSingle();
scan.ImageAspectRatio = br.ReadSingle();
scan.Image = br.ReadBytes(16500); // 220*25*3
//var outFileName = "E:\\export\\" + ginc + "_" + inc++ + ".bmp";
//BitmapImageHelper.SaveBitmap(220, 25, scan.Image, outFileName);
scan.DestBytes = BitmapImageHelper.GetBytes(220, 25, scan.Image);
result.Scans.Add(scan);
}
}
}
}
ginc++;
return(result);
}
public DFile ParseDFile(string file, string gelName, int gelSize)
{
int inc = 1;
DFile result = new DFile();
using (var fs = File.OpenRead(file))
{
using (var br = new BinaryReader(fs))
{
bool isIFE = gelName == "IFE";
result.Scans = new List<ScanCommon>();
for (int i = 0; i < gelSize; i++)
{
string name = ConvertToString(br.ReadBytes(8));
int gelSize1 = br.ReadInt16();
// 跳过ScanCommon信息解析
br.ReadBytes(842 - 10);
//scan.Patient;
//scan.Status
//scan.DateTimeStam;
//scan.SampleNumbe;
//scan.TestIdentit;
//scan.RunIdentity
//scan.Comments
//scan.Characteristic
//scan.ImageContras;
if (isIFE)
{
var scan = new IFEScan();
// 解析units
scan.Units = new List<float>();
for (int u = 0; u < 9 + 1; u++)
{
scan.Units.Add(br.ReadSingle());
}
//
scan.ImageAspectRatio = br.ReadSingle();
scan.Image = br.ReadBytes(50400); // 6 * 140 * 20 *3
List<Bitmap> parts = new List<Bitmap>();
List<string> bandNames = new List<string> { "SP", "G", "A", "M", "K", "L" };
for (int v = 0; v < 6; v++)
{
var temp = new byte[8400];
Array.Copy(scan.Image, v * 8400, temp, 0, 8400);
var part = BitmapImageHelper.CreateBitmap(140, 20, temp, true);
parts.Add(part);
}
var bitMap = BitmapImageHelper.FixImageMerge(parts, bandNames);
//var outFileName = "E:\\export\\" + ginc + "_" + inc++ + ".bmp";
//bitMap.Save(outFileName);
scan.DestBytes = BitmapImageHelper.GetBytes(bitMap);
result.Scans.Add(scan);
}
else
{
var scan = new StdScan();
// 解析ScanIdentifier
scan.Reference = new List<ScanIdentifier>();
for (int s = 0; s < 4; s++)
{
var reference = new ScanIdentifier();
reference.TimeStamp = br.ReadUInt32();
reference.SampleNumber = br.ReadByte();
reference.Instrument = ConvertToString(br.ReadBytes(11));
scan.Reference.Add(reference);
}
// skip
// br.ReadBytes(894);
scan.FractionIdentity = br.ReadUInt16();
// 解析data
scan.Data = new List<short>();
int dcount = br.ReadInt16();
var pos = 910 + i * 21150;
var pos1 = fs.Position;
for (int d = 0; d < dcount; d++)
{
scan.Data.Add(br.ReadInt16());
}
// skip
br.ReadBytes(2090 - (dcount + 1) * 2);
// 解析rawdata
scan.RawData = new List<ushort>();
int rdcount = br.ReadInt16();
int rdcount1 = rdcount * 3 / 4;
for (int r = 0; r < rdcount1; r++)
{
scan.RawData.Add(br.ReadUInt16());
}
// skip
br.ReadBytes(1568 - (rdcount1 + 1) * 2);
// 解析fraction
scan.Fraction = new List<short>();
for (int r = 0; r < 10 + 1; r++)
{
scan.Fraction.Add(br.ReadInt16());
}
// 解析rawfraction
scan.RawFraction = new List<short>();
for (int r = 0; r < 10 + 1; r++)
{
scan.RawFraction.Add(br.ReadInt16());
}
// union 1
br.ReadInt16();
// union 2
br.ReadBytes(20);
// todo：fix count
//scan.OverlayAdjust = new List<short>();
//for (int o = 0; o < 16; o++)
//{
// scan.OverlayAdjust.Add(br.ReadInt16());
//}
scan.Sensitivity = br.ReadInt16();
scan.Amplification = br.ReadSingle();
scan.DspScaleFactor = br.ReadSingle();
scan.NumScaleFactor = br.ReadSingle();
scan.ImageAspectRatio = br.ReadSingle();
scan.Image = br.ReadBytes(16500); // 220*25*3
//var outFileName = "E:\\export\\" + ginc + "_" + inc++ + ".bmp";
//BitmapImageHelper.SaveBitmap(220, 25, scan.Image, outFileName);
scan.DestBytes = BitmapImageHelper.GetBytes(220, 25, scan.Image);
result.Scans.Add(scan);
}
}
}
}
ginc++;
return result;
}