internal FileDetailsForm(CollarFile file)
{
InitializeComponent();
RestoreWindow();
File = file;
CurrentUser = Environment.UserDomainName + @"\" + Environment.UserName;
LoadDataContext();
SetUpControls();
}
/// <summary>
/// Full or partial processing of Telonics data in an Argos file
/// </summary>
/// <param name="file">The collar file with Argos data to processes. Must not be null</param>
/// <param name="platform">The Argos platform in the file to process.
/// If this is null, then all the platforms will be processed.</param>
public static void ProcessFile(CollarFile file, ArgosPlatform platform = null)
{
if (file == null)
throw new ArgumentNullException("file", "No collar file was provided to process.");
if (!ProcessOnServer(file, platform))
if (file.Format == 'H')
ProcessDataLogFile(file);
else if (file.Format == 'I')
ProcessIdfFile(file);
else
ProcessFile(file, GetArgosFile(file), platform);
}
internal static void exceptionHandler(Exception ex, CollarFile file, ArgosPlatform platform)
{
if (file == null)
{
ReportException(
String.Format("Unexpected Exception ({0}) when Loading an unknown collar file",
ex.Message));
}
else
{
ReportException(
String.Format("Unexpected Exception ({0}) when Loading collar file (id: {1}, name:{2}",
ex.Message, file.FileId, file.FileName));
}
}
private static void HandleException(Exception ex, CollarFile file, ArgosPlatform platform)
{
if (file == null)
{
Console.WriteLine("Processor exception handler called without a file: {0}", ex.Message);
return;
}
if (file.LookupCollarFileFormat.ArgosData != 'Y')
{
Console.WriteLine("Processor exception handler called with a Non-Argos Data file({1}): {0}", ex.Message, file.FileId);
return;
}
var db = new AnimalMovementDataContext();
db.ArgosFileProcessingIssues_Insert(file.FileId, ex.Message, platform == null ? null : platform.PlatformId,
null, null, null, null);
}
private static ArgosFile GetArgosFile(CollarFile file)
{
switch (file.Format)
{
case 'E':
return new ArgosEmailFile(file.Contents.ToArray());
case 'F':
return new ArgosAwsFile(file.Contents.ToArray());
case 'G':
return new DebevekFile(file.Contents.ToArray());
default:
throw new InvalidOperationException("Unsupported file format: " + file.Format +
" (supported formats are E,F,G)");
}
}
private static void ProcessTransmissions(CollarFile file, ArgosFile argos,
IGrouping<string, ArgosTransmission> group)
{
LogGeneralMessage(String.Format(" Start processing transmissions for Argos Id {0}", group.Key));
var platformId = group.Key;
var transmissions = group.ToList();
var first = transmissions.Min(t => t.DateTime);
var last = transmissions.Max(t => t.DateTime);
var databaseViews = new AnimalMovementViews();
var parameterSets =
databaseViews.GetTelonicsParametersForArgosDates(platformId, first, last)
.OrderBy(c => c.StartDate)
.ToList();
if (parameterSets.Count == 0)
{
var msg = String.Format("No Collar for ArgosId {0} from {1:g} to {2:g}",
platformId, first, last);
LogIssueForFile(file.FileId, msg, platformId, null, null, first, last);
return;
}
if (parameterSets[0].StartDate != null && first < parameterSets[0].StartDate)
{
var msg = String.Format("No Collar for ArgosId {0} from {1:g} to {2:g}",
platformId, first, parameterSets[0].StartDate);
LogIssueForFile(file.FileId, msg, platformId, null, null, first, parameterSets[0].StartDate);
}
int lastIndex = parameterSets.Count - 1;
if (parameterSets[lastIndex].EndDate != null && parameterSets[lastIndex].EndDate < last)
{
var msg = String.Format("No Collar for ArgosId {0} from {1:g} to {2:g}",
platformId, parameterSets[lastIndex].EndDate, last);
LogIssueForFile(file.FileId, msg, platformId, null, null, parameterSets[lastIndex].EndDate, last);
}
foreach (var parameterSet in parameterSets)
{
if (parameterSet.ParameterId == null ||
(parameterSet.CollarModel == "Gen3" && parameterSet.Gen3Period == null) ||
(parameterSet.CollarModel == "Gen4" && parameterSet.Format == null))
{
var start = parameterSet.StartDate ?? first;
var end = parameterSet.EndDate ?? last;
var msg = String.Format("No Telonics Parameters for Collar {0}/{3} from {1:g} to {2:g}",
parameterSet.CollarManufacturer, start, end, parameterSet.CollarId);
LogIssueForFile(file.FileId, msg, platformId, parameterSet.CollarManufacturer, parameterSet.CollarId, start, end);
continue;
}
try
{
ProcessParameterSet(file, argos, first, last, transmissions, parameterSet);
}
catch (Exception ex)
{
var message = String.Format(
"ERROR {0} adding Argos {1} transmissions from {2:g} to {3:g} to Collar {4}/{5}",
ex.Message, parameterSet.PlatformId, first, last,
parameterSet.CollarManufacturer, parameterSet.CollarId);
LogIssueForFile(file.FileId, message, parameterSet.PlatformId, parameterSet.CollarManufacturer,
parameterSet.CollarId, first, last);
}
}
LogGeneralMessage(" Finished processing transmissions");
}
private static void ProcessParameterSet(CollarFile file, ArgosFile argos, DateTime first, DateTime last,
IEnumerable<ArgosTransmission> transmissions,
GetTelonicsParametersForArgosDatesResult parameters)
{
LogGeneralMessage(String.Format(" Start processing collar {0}/{1}", parameters.CollarManufacturer,
parameters.CollarId));
var start = parameters.StartDate ?? DateTime.MinValue;
if (start < first)
start = first;
var end = parameters.EndDate ?? DateTime.MaxValue;
if (last < end)
end = last;
var processor = GetProcessor(file, parameters);
var transmissionSubset = transmissions.Where(t => start <= t.DateTime && t.DateTime <= end);
var lines = processor.ProcessTransmissions(transmissionSubset, argos);
var data = Encoding.UTF8.GetBytes(String.Join(Environment.NewLine, lines) + Environment.NewLine);
var filename = Path.GetFileNameWithoutExtension(file.FileName) + "_" + parameters.CollarId + ".csv";
var fileLoader = new FileLoader(filename, data)
{
Project = file.Project,
Owner = file.ProjectInvestigator,
Collar = new Collar {CollarManufacturer = parameters.CollarManufacturer,
CollarId = parameters.CollarId},
Status = file.Status,
ParentFileId = file.FileId,
ArgosDeploymentId = parameters.DeploymentId,
CollarParameterId = parameters.ParameterId,
AllowDuplicates = true
};
fileLoader.Load();
var message =
String.Format(
" Successfully added Argos {0} transmissions from {1:g} to {2:g} to Collar {3}/{4}",
parameters.PlatformId, start, end,
parameters.CollarManufacturer, parameters.CollarId);
LogGeneralMessage(message);
}
private static bool ProcessOnServer(CollarFile file, ArgosPlatform platform = null)
{
if (NeedTelonicsSoftware(file) && !HaveAccessToTelonicsSoftware())
{
if (OnDatabaseServer())
throw new InvalidOperationException("No access to Telonics software to process files.");
LogGeneralMessage(String.Format("Start processing file {0} on database", file.FileId));
var database = new AnimalMovementFunctions();
//FIXME: ProcessOnServer may be called with H and I (Teloncs files which need processing, but are not ArgosFiles)
//FIXME: If called by Animal Movement App Upload Form on client machine with H or I files, this code will fail
// if teloncs file but not argos
// database.TelonicsData_Process(file.FileId);
// if not telonics or not Argos then fail with warning
if (platform == null)
database.ArgosFile_Process(file.FileId);
else
database.ArgosFile_ProcessPlatform(file.FileId, platform.PlatformId);
LogGeneralMessage("Finished processing file on database");
return true;
}
return false;
}
private static void ProcessIdfFile(CollarFile file)
{
LogGeneralMessage(String.Format("Start local processing of file {0}", file.FileId));
var databaseViews = new AnimalMovementViews();
var idfLink = databaseViews.CollarParametersForIridiumDownload(file.FileId).FirstOrDefault();
if (idfLink == null)
{
LogGeneralMessage("No parameters found. Skipping file.");
return;
}
var database = new AnimalMovementDataContext();
var tpfFile = database.CollarParameterFiles.FirstOrDefault(f => f.FileId == idfLink.ParameterFileId);
if (tpfFile == null)
{
LogGeneralMessage("No collar parameter file found. Skipping file.");
return;
}
var collar = database.Collars.FirstOrDefault(
c => c.CollarManufacturer == idfLink.CollarManufacturer &&
(c.CollarId == idfLink.CollarId || c.CollarId == idfLink.CollarId.Substring(0,6)));
if (collar == null)
{
LogGeneralMessage("No collar found. Skipping file.");
return;
}
var databaseFunctions = new AnimalMovementFunctions();
//FIXME: check that this is generic to all telonics processing and not just Argos files
databaseFunctions.ArgosFile_ClearProcessingResults(file.FileId);
databaseFunctions.CollarFile_FixOwnerOfIdfFile((file.FileId));
var processor = new Gen4Processor(tpfFile.Contents.ToArray());
var lines = processor.ProcessIdf(file.Contents.ToArray());
var data = Encoding.UTF8.GetBytes(String.Join(Environment.NewLine, lines) + Environment.NewLine);
var filename = Path.GetFileNameWithoutExtension(file.FileName) + "_" + DateTime.Now.ToString("yyyyMMdd") + ".csv";
var fileLoader = new FileLoader(filename, data)
{
Project = null,
Owner = tpfFile.ProjectInvestigator, //Must match result from databaseFunctions.CollarFile_FixOwnerOfIdfFile
Collar = collar,
Status = file.Status,
ParentFileId = file.FileId,
AllowDuplicates = false
};
fileLoader.Load();
LogGeneralMessage("Finished local processing of file");
}
private static void ProcessFile(CollarFile file, ArgosFile argos, ArgosPlatform platform)
{
LogGeneralMessage(String.Format("Start local processing of file {0}", file.FileId));
var databaseFunctions = new AnimalMovementFunctions();
if (platform == null)
{
databaseFunctions.ArgosFile_ClearProcessingResults(file.FileId);
if (IsArgosAwsFileIncomplete(argos as ArgosAwsFile) ?? false)
LogIssueForFile(file.FileId,
"The Argos server could not return all the data requested and this file is incomplete.");
}
else
{
databaseFunctions.ArgosFile_UnProcessPlatform(file.FileId, platform.PlatformId);
}
var transmissionsByPlatform = from transmission in argos.GetTransmissions()
group transmission by transmission.PlatformId
into transmissions
where platform == null || transmissions.Key == platform.PlatformId
select transmissions;
foreach (var transmissionSet in transmissionsByPlatform)
try
{
ProcessTransmissions(file, argos, transmissionSet);
}
catch (Exception ex)
{
var message = String.Format("ERROR {0} adding Argos {1} transmissions",
ex.Message, transmissionSet.Key);
LogIssueForFile(file.FileId, message, transmissionSet.Key);
}
LogGeneralMessage("Finished local processing of file");
}
private static void ProcessDataLogFile(CollarFile file)
{
LogGeneralMessage(String.Format("Start local processing of file {0}", file.FileId));
var databaseFunctions = new AnimalMovementFunctions();
//FIXME: check that this is generic to all telonics processing and not just Argos files
databaseFunctions.ArgosFile_ClearProcessingResults(file.FileId);
var processor = new Gen4Processor(null);
var lines = processor.ProcessDataLog(file.Contents.ToArray());
//Add a newline, so that it exactly matches the direct output from TDC
var data = Encoding.UTF8.GetBytes(String.Join(Environment.NewLine, lines) + Environment.NewLine);
var filename = Path.GetFileNameWithoutExtension(file.FileName) + "_" + DateTime.Now.ToString("yyyyMMdd") + ".csv";
var fileLoader = new FileLoader(filename, data)
{
Project = file.Project,
Owner = file.ProjectInvestigator,
Collar = new Collar
{
CollarManufacturer = file.CollarManufacturer,
CollarId = file.CollarId
},
Status = file.Status,
ParentFileId = file.FileId,
AllowDuplicates = true
};
fileLoader.Load();
LogGeneralMessage("Finished local processing of file");
}
private static bool NeedTelonicsSoftware(CollarFile file)
{
var database = new AnimalMovementViews();
return database.FileHasGen4Data(file.FileId) ?? false;
}
private static IProcessor GetProcessor(CollarFile file, GetTelonicsParametersForArgosDatesResult parameters)
{
switch (file.Format)
{
case 'E':
case 'F':
switch (parameters.CollarModel)
{
case "Gen3":
return GetGen3Processor(parameters);
case "Gen4":
return GetGen4Processor(parameters);
case "GPS8000":
return GetGps8000Processor(parameters);
default:
throw new InvalidOperationException("Unsupported collar model '" + parameters.CollarModel +
"'. (supported models are Gen3, and Gen4)");
}
case 'G':
return new DebevekProcessor();
default:
throw new InvalidOperationException("Unsupported CollarFile Format '" + file.Format +
"'. (supported formats are E,F,G)");
}
}
