public void twofile()
{
// driver function for two files
x = new Filemanager();
y = new Filemanager();
one = x.trimmerselector();
two = y.trimmerselector();
directa = x.directgetter();
directb = y.directgetter();
onea = new StreamWriter(directa);
twoa = new StreamWriter(directb);
// loops until end of file, reads 500 read blocks in two files, sends them to the trimmer and writes results.
while (!one.EndOfStream && !two.EndOfStream)
{
blockreader(titleline, SequenceLine, QualityLine, one);
blockreader(titleline2, SequenceLine2, QualityLine2, two);
TrimmerTwoFIle();
filesaver(titleline, SequenceLine, QualityLine, onea);
filesaver(titleline2, SequenceLine2, QualityLine2, twoa);
}
}
public void singlefile()
{
// driver function for single file mode
f = new Filemanager();
one = f.trimmerselector();
directa = f.directgetter();
onea = new StreamWriter(directa);
// loops until end of file, reads 500 read blocks, sends them to the trimmer and writes results.
while (!one.EndOfStream)
{
blockreader(titleline, SequenceLine, QualityLine, one);
TrimmerOneFile();
filesaver(titleline, SequenceLine, QualityLine, onea);
}
onea.Close();
// completion message
foreach (Window window in Application.Current.Windows)
{
if (window.GetType() == typeof(PreviewWindow))
{
(window as PreviewWindow).StatusBox.Text = (window as PreviewWindow).StatusBox.Text + "\nTrimmer complete\n";
}
}
}