public UpdateHistorySeriesMappingCommand(StudyHistory studyHistory, StudyStorageLocation destStudy, UidMapper map)
: base("Update Study History Series Mapping")
{
_map = map;
_studyHistory = studyHistory;
_destStudy = destStudy;
}
/// <summary>
/// Constructor
/// </summary>
public SeriesSopUpdateCommand(StudyStorageLocation originalStudy, StudyStorageLocation targetStudy, UidMapper uidMapper)
: base("SeriesSopUpdateCommand")
{
_originalStudy = originalStudy;
_targetStudy = targetStudy;
_uidMapper = uidMapper;
}
/// <summary>
/// Constructor
/// </summary>
public SeriesSopUpdateCommand(StudyStorageLocation originalStudy, StudyStorageLocation targetStudy, UidMapper uidMapper)
: base("SeriesSopUpdateCommand")
{
_originalStudy = originalStudy;
_targetStudy = targetStudy;
_uidMapper = uidMapper;
}
protected void CreateOrLoadUidMappings()
{
// Load the mapping for the study
if (_destinationStudyStorage != null)
{
var xml = new UidMapXml();
xml.Load(_destinationStudyStorage);
UidMapper = new UidMapper(xml);
}
else
{
UidMapper = new UidMapper();
}
UidMapper.SeriesMapUpdated += UidMapper_SeriesMapUpdated;
}
protected void LoadUidMappings()
{
// Load the mapping for the study
if (_destinationStudyStorage != null)
{
string path = Path.Combine(_destinationStudyStorage.GetStudyPath(), "UidMap.xml");
if (File.Exists(path))
{
UidMapXml xml = new UidMapXml();
xml.Load(_destinationStudyStorage);
UidMapper = new UidMapper(xml);
UidMapper.SeriesMapUpdated += UidMapper_SeriesMapUpdated;
}
}
}
public SaveUidMapXmlCommand(StudyStorageLocation studyLocation, UidMapper mapper) :
base("SaveUidMap", true)
{
_studyLocation = studyLocation;
_map = mapper;
}
private static SeriesSopUpdateCommand GetUidMappingCommand(StudyStorageLocation sourceStudy, StudyStorageLocation targetStudy, UidMapper uidMapper, string originalSopUid, string originalSeriesUid)
{
SeriesSopUpdateCommand cmd;
string newSeriesUid = uidMapper.FindNewSeriesUid(originalSeriesUid);
string newSopUid = uidMapper.FindNewSopUid(originalSopUid);
if (string.IsNullOrEmpty(newSeriesUid) == false)
{
// Series was assigned new uid
if (string.IsNullOrEmpty(newSopUid))
{
// this is new instance
newSopUid = DicomUid.GenerateUid().UID;
uidMapper.AddSop(originalSopUid, newSopUid);
cmd = new SeriesSopUpdateCommand(sourceStudy, targetStudy, uidMapper);
}
else
{
Platform.Log(LogLevel.Info, "Map SOP UID {0} to {1}", originalSopUid, newSopUid);
// this is duplicate
if (File.Exists(targetStudy.GetSopInstancePath(newSeriesUid, newSopUid)))
{
throw new InstanceAlreadyExistsException("Instance already exists")
{
SeriesInstanceUid = newSeriesUid,
SopInstanceUid = newSopUid
};
}
cmd = new SeriesSopUpdateCommand(sourceStudy, targetStudy, uidMapper);
}
}
else
{
// this is new series
newSopUid = DicomUid.GenerateUid().UID;
uidMapper.AddSeries(sourceStudy.StudyInstanceUid, targetStudy.StudyInstanceUid, originalSeriesUid, newSopUid);
cmd = new SeriesSopUpdateCommand(sourceStudy, targetStudy, uidMapper);
Platform.Log(LogLevel.Info, "Map SOP UID {0} to {1}", originalSopUid, newSopUid);
}
return cmd;
}
private static void UpdateUidMap(StudyStorageLocation dest, UidMapper uidMapper)
{
using (ServerCommandProcessor processor = new ServerCommandProcessor("Update UID Mapping Processor"))
{
processor.AddCommand(new SaveUidMapXmlCommand(dest, uidMapper));
if (!processor.Execute())
{
throw new ApplicationException(String.Format("AUTO-RECONCILE Failed: Unable to update uid mapping. Reason: {0}", processor.FailureReason), processor.FailureException);
}
}
}
private AutoReconcilerResult MergeImage(StudyReconcileAction action, DicomFile file, StudyHistory lastHistory)
{
string originalSeriesUid = file.DataSet[DicomTags.SeriesInstanceUid].ToString();
string originalSopUid = file.DataSet[DicomTags.SopInstanceUid].ToString();
AutoReconcilerResult preProcessingResult = null;
StudyStorageLocation destStudy;
UidMapper uidMapper = null;
if (lastHistory.DestStudyStorageKey != null)
{
StudyStorage destinationStudy = StudyStorage.Load(lastHistory.DestStudyStorageKey);
//Load the destination. An exception will be thrown if any issues are encountered.
FilesystemMonitor.Instance.GetWritableStudyStorageLocation(destinationStudy.ServerPartitionKey,
destinationStudy.StudyInstanceUid,
StudyRestore.True, StudyCache.True,
out destStudy);
EnsureStudyCanBeUpdated(destStudy);
bool belongsToAnotherStudy = !destStudy.Equals(StorageLocation);
ImageUpdateCommandBuilder commandBuilder = new ImageUpdateCommandBuilder();
IList<BaseImageLevelUpdateCommand> commands = commandBuilder.BuildCommands<StudyMatchingMap>(destStudy);
if (belongsToAnotherStudy)
{
Platform.Log(LogLevel.Info, "AUTO-RECONCILE: Move SOP {0} to Study {1}, A#: {2}, Patient {3}", originalSopUid, destStudy.StudyInstanceUid, destStudy.Study.AccessionNumber, destStudy.Study.PatientsName);
// Load the Uid Map, either from cache or from disk
if (!_uidMapCache.TryGetValue(destStudy.Key, out uidMapper))
{
UidMapXml mapXml = new UidMapXml();
mapXml.Load(destStudy);
uidMapper = new UidMapper(mapXml);
_uidMapCache.Add(destStudy.Key, uidMapper);
}
try
{
commands.Add(GetUidMappingCommand(StorageLocation, destStudy, uidMapper, originalSopUid, originalSeriesUid));
}
catch (InstanceAlreadyExistsException ex)
{
Platform.Log(LogLevel.Info, "An instance already exists with the SOP Instance Uid {0}", ex.SopInstanceUid);
preProcessingResult = new AutoReconcilerResult(StudyReconcileAction.Discard) { DiscardImage = true };
return preProcessingResult;
}
}
preProcessingResult = new AutoReconcilerResult(action) { Changes = GetUpdateList(file, commands) };
UpdateImage(file, commands);
// First, must update the map
if (uidMapper != null && uidMapper.Dirty)
{
UpdateUidMap(destStudy, uidMapper);
}
if (belongsToAnotherStudy)
{
SopInstanceImporterContext importContext = new SopInstanceImporterContext(_contextID, file.SourceApplicationEntityTitle, destStudy.ServerPartition);
SopInstanceImporter importer = new SopInstanceImporter(importContext);
DicomProcessingResult result = importer.Import(file);
if (!result.Successful)
{
throw new ApplicationException(result.ErrorMessage);
}
}
}
return preProcessingResult;
}
