public static void Start()
{
Console.WriteLine("**Start OMSSA Reader**");
long startMem = System.Environment.WorkingSet;
Stopwatch watch = new Stopwatch();
watch.Start();
List<PeptideSpectralMatch> psms;
using (PsmReader reader = new OmssaCsvPsmReader("Resources/Omssa_yeast.csv"))
{
reader.LoadProteins("Resources/yeast_uniprot_120226.fasta");
reader.AddFixedModification(ModificationDictionary.GetModification("CAM"));
reader.AddVariableModification(ModificationDictionary.GetModification("Oxidation"),"oxdiation of M");
psms = reader.ReadNextPsm().OrderBy(psm => psm.Score).ToList();
}
watch.Stop();
Console.WriteLine("{0:N0} psms were read in", psms.Count);
Console.WriteLine("Time elapsed: {0}", watch.Elapsed);
Console.WriteLine("Memory used: {0:N0} MB", (System.Environment.WorkingSet - startMem) / (1024 * 1024));
Console.WriteLine("**End OMSSA Reader**");
}
