C# (CSharp) CQS.Genome.SmallRNA SmallRNACountProcessorOptions Examples

Example #1

File: TestSmallRNACountProcessorOptions.cs Project: shengqh/CQS.Test

    public void Test()
    {
      var features = new SmallRNACountProcessorOptions()
      {
        CoordinateFile = "../../../data/hg19_smallrna_test.bed",
        FastaFile = "../../../data/hg19_smallrna_test.bed.fa"
      }.GetSequenceRegions();

      Assert.AreEqual(3, features.Count);
      var lst = features.GroupByName();
      Assert.AreEqual(3, lst.Count);
      var group = lst.GroupBySequence();
      Assert.AreEqual(3, group.Count);
    }

Example #2

 public SmallRNACandidateBuilder(SmallRNACountProcessorOptions options) : base(options)
 {
     this.options = options;
 }