C# (CSharp) CQS.Genome.Mapping MappedCountProcessorOptions Examples

Example #1

File: MappedCountProcessorUI.cs Project: shengqh/CQS.Core

 protected override RCPA.IProcessor GetProcessor()
 {
   MappedCountProcessorOptions options = new MappedCountProcessorOptions()
   {
     InputFile = bamFile.FullName,
     CoordinateFile = gffFile.FullName,
     FastqFile = fileFastq.FullName,
     EngineType = engines.SelectedIndex + 1,
     CountFile = countFile.FullName,
     BedAsGtf = cbBedAsGtf.Checked
   };
   return new MappedCountProcessor(options);
 }

Example #2

File: MappedCountProcessorUI.cs Project: biosharp-dotnet-labs/CQS.Core

        protected override RCPA.IProcessor GetProcessor()
        {
            MappedCountProcessorOptions options = new MappedCountProcessorOptions()
            {
                InputFile      = bamFile.FullName,
                CoordinateFile = gffFile.FullName,
                FastqFile      = fileFastq.FullName,
                EngineType     = engines.SelectedIndex + 1,
                CountFile      = countFile.FullName,
                BedAsGtf       = cbBedAsGtf.Checked
            };

            return(new MappedCountProcessor(options));
        }